Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2167 134 1e-26 seq149 100 2e-16 seq582 89.7 4e-13 seq310 89.7 4e-13 seq2047 87.8 2e-12 >seq2167 Length=1051226 Score = 134 bits (148), Expect = 1e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA--GGCCA 24048 |||||| | || ||||| ||||| |||||||| | || || | ||||| || | || Sbjct 203986 ATGCAAATTTTCGTAAAGACATTGACTGGAAAGACAATCACTTTGGAAGTTGAAAGTTCA 203927 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 ||||| ||||| | ||||| || || ||||||||||| || ||||| || | Sbjct 203926 --GACACAATCGACAATGTCAAGGCGAAAATCCAGGACAAAGAAGGTATCCCTCCAGACC 203869 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | || |||||||| | | ||| ||||| |||||||||| |||| | |||||||| Sbjct 203868 AGCAAAGACTGATCTTTGCCGGTAAGCAGCTCGAAGATGGTAGAACACTTGCCGATTATA 203809 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||||| || || || ||||||| ||| | |||||||||||||| Sbjct 203808 ACATTCAAAAGGAGTCGACTCTTCATTTGGTGCTGCGATTGAGAGGAGGA 203759 Score = 111 bits (122), Expect = 1e-19 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA--GGCCA 24048 |||||| | || || || ||||| |||||||| ||||||| | |||||||| | || Sbjct 204214 ATGCAAATCTTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTCGAAAGTTCA 204155 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 ||||| ||||| | || ||| || || |||||||||||||| ||||| || | Sbjct 204154 --GACACAATCGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCGGACC 204097 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTAT 24167 | || ||||| || | | || ||||| |||||||||| ||| |||| || ||||| Sbjct 204096 AGCAAAGACTAATCTTTGCAGGTAAGCAGCTCGAAGATGGCAG-AACGCTGGCTGATTAC 204038 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 || ||||| |||||||| || | || | ||| |||| Sbjct 204037 AATATTCAGAAAGAATCGACTCTCCACCTTGTGCTAAG 204000 Score = 107 bits (118), Expect = 2e-18 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA--GGCC 24047 |||||| | ||||| || || || |||||||| | || || | || ||||| | | Sbjct 204443 AATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACAATCACTTTGGAGGTCGAAAGTTC 204384 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||| ||||| | || ||| || || ||||||||||| || ||||| || Sbjct 204383 A--GACACAATCGACAACGTTAAAGCCAAAATCCAAGACAAAGAAGGGATCCCTCCAGAC 204326 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTA 24166 || || |||||||| | | ||| |||||||| ||||||| |||| | | ||| |||| Sbjct 204325 CAGCAAAGACTGATCTTTGCCGGAAAGCAACTTGAAGATGGTAGAA-CATTGGCGGATTA 204267 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||| ||||| || | ||| | ||||| | ||||| || || Sbjct 204266 CAACATTCAAAAGGAATCAACTCTCCATCTTGTGTTGCGGTTGAGGGGTGG 204216 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || || || | || || | ||||||||| | Sbjct 204898 ATGCAGATTTTTGTGAAAACTCTTACCGGGAAGACCATCACTCTTGAAGTCGAGAGCTCA 204839 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | |||||| |||||| ||||| |||||||| ||||| || || Sbjct 204838 GATACGATCGATAATGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAG 204779 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||| |||| | | ||||||||||||||||||| ||| | || ||||| || Sbjct 204778 CAAAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGTCGAACCCTCGCTGATTACAAT 204719 Query 24171 ATTCAAAAAGAATCTACA 24188 || || |||||||||||| Sbjct 204718 ATCCAGAAAGAATCTACA 204701 Score = 98.7 bits (108), Expect = 9e-16 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA--GGCCA 24048 ||||| | || || || ||||| |||||||| ||||||| | ||||| || | || Sbjct 211401 ATGCAGATATTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTTGAAAGTTCA 211342 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 ||||| ||||| | || ||| || ||| ||||||||||| || ||||| |||| Sbjct 211341 --GACACTATCGATAATGTTAAAGCGAAAATTCAGGACAAAGAAGGGATTCCTCCGGATC 211284 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | || ||| |||| | | || || ||||||||||||| ||| | || ||||| | Sbjct 211283 AGCAAAGATTGATCTTTGCTGGGAAACAACTCGAAGATGGGCGAACCCTCGCGGATTACA 211224 Query 24169 ACATTCAAAAAGAATCTACA 24188 | || || ||||| |||||| Sbjct 211223 ATATCCAGAAAGAGTCTACA 211204 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||||| || ||||| | || || | ||||| ||| Sbjct 210945 ATGCAAATCTTTGTCAAGACATTGACCGGAAAGACAATCACTTTAGAAGTTGAGAGTTCG 210886 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || || || ||||||||||| || || ||||| || Sbjct 210885 GACACTATCGACAATGTTAAGGCGAAAATCCAAGACAAAGAAGGAATCCCACCCGACCAG 210826 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | || ||||| || ||||||| || | | |||||||||| Sbjct 210825 CAGAGATTGATCTTTGCAGGTAAGCAGCTGGAAGATGGTAGGACGCTTGCCGATTATAAC 210766 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| || || || ||||||| || | | ||||| |||||| Sbjct 210765 ATCCAAAAGGAGTCGACTCTTCATTTGGTACTGCGGTTGAGGGGAGGA 210718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| | ||||| || |||| || |||| |||||| | Sbjct 211629 ATGCAGATATTTGTAAAAACTCTTACTGGTAAGACGATCACTCTCGAGGTCGAGAGCTCA 211570 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||| | || | ||||| || ||| || || ||||| || ||||| ||||| Sbjct 211569 GATACCGTAGACAACGTCAAGTCTAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCAG 211510 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | || || ||||||||||| | ||| | || ||||| || Sbjct 211509 CAGAGGCTAATCTTTGCTGGGAAACAACTCGAAGACGGGCGAACCCTCGCGGATTACAAT 211450 Query 24171 ATTCAAAAAGAATCTACA 24188 || || |||||||||||| Sbjct 211449 ATCCAGAAAGAATCTACA 211432 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG--AGGCCA 24048 ||||| | ||||||||||| | || || ||| | || || | || || | || || Sbjct 204670 ATGCAGATTTTTGTAAAAACTCTTACCGGCAAAACAATCACTTTGGAGGTTGAAAGTTCA 204611 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 ||||| ||||| | |||||| || || ||||| ||||| || ||||| || | Sbjct 204610 --GACACAATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGGATCCCTCCAGACC 204553 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | || ||| |||| | || || |||||||| ||||||| ||| | || ||||| | Sbjct 204552 AGCAAAGATTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGAACCCTCGCTGATTACA 204493 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 | || || |||||||| || | ||| | || ||||| Sbjct 204492 ATATCCAGAAAGAATCGACTCTCCATCTTGTCCTAAGA 204455 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || | || || || |||| || |||| |||||| Sbjct 205126 ATGCAGATCTTTGTAAAGACTCTTACCGGCAAGACGATCACTCTCGAGGTCGAGAGTTCA 205067 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | |||||| || ||| || || ||||| || || || || || Sbjct 205066 GATACGATCGACAACGTCAAAGCTAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAG 205007 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| | || | | || || ||||||||||||| | ||| | || ||||| || Sbjct 205006 CAGAGGTTAATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACCCTCGCAGATTACAAT 204947 Query 24171 ATTCAAAAAGAATCTACA 24188 || ||||||||||||||| Sbjct 204946 ATCCAAAAAGAATCTACA 204929 >seq149 Length=2637241 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| ||||||||| | || || ||||| |||| |||||| | || || ||||||| || Sbjct 721754 AAAGAAAATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACAATCACTCTCGAAGTGGA 721813 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | | |||||||||||| | ||||| ||||| ||||| ||||| || || || Sbjct 721814 GAGCTCCGACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGTATCCCGCC 721873 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 ||||| ||| | || || | || ||| || || || || || | | | | | | ||| Sbjct 721874 GGATCAGCAGCGCCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCCGGACCTTAGCCGA 721933 Query 24164 TTATAACATTCAAAAAGAATCTACA 24188 || |||||||| || ||||| ||| Sbjct 721934 CTACAACATTCAGAAGGAATCCACA 721958 >seq582 Length=2128859 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || |||||||| | |||||| |||| || ||| | | Sbjct 298988 ATGCAGATTTTCGTCAAGACCTTGACTGGAAAGACCATTACCCTCGAGGTGGAGAGCTCC 299047 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||| || || || || || || || Sbjct 299048 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 299107 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | || ||| ||||| || || || | | | | | ||| || ||| Sbjct 299108 CAGAGACTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACTTTGGCCGACTACAAC 299167 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || || ||||| |||| || || Sbjct 299168 ATTCAGAAGGAGTCTACCCTTCACTTGGT 299196 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| ||||||| ||| | | Sbjct 298760 ATGCAGATTTTCGTCAAGACCCTTACTGGGAAGACCATCACCCTCGAAGTGGAGAGCTCC 298819 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||| |||||||| || || ||||| Sbjct 298820 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAG 298879 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 || ||| |||| | | || ||||| ||||| |||| | | | | || |||||||| Sbjct 298880 CAAAGATTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGTA-CTTTGGCAGATTATAA 298938 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || || || |||||| | ||||| || Sbjct 298939 CATCCAGAAGGAGTCTACACTGCATTTGGT 298968 >seq310 Length=2395884 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || |||| |||||| | || || |||| |||||| | Sbjct 1996064 ATGCAGATATTTGTCAAGACTCTAACCGGAAAAACTATAACTCTCGAGGTCGAGAGTTCC 1996123 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | ||||| || || ||||| ||||| || || || || || Sbjct 1996124 GATACAATCGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGGATTCCCCCTGACCAG 1996183 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || || | || ||||| ||||||||||||| ||||| | | ||||| ||| Sbjct 1996184 CAAAGGCTAATCTTCGCTGGCAAACAACTCGAAGATGGCAGAACCCTTGCAGATTACAAC 1996243 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || ||||| Sbjct 1996244 ATCCAAAAGGAGTCTAC 1996260 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || |||||| | ||||| | || || || | Sbjct 1996976 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAAACCATTACATTGGAGGTTGAAAGCTCA 1997035 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||| ||| ||||| || || || ||||| || || Sbjct 1997036 GACACCATCGATAACGTGAAGGCAAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAG 1997095 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | || ||||| ||||||||||||| || | | | ||||| || Sbjct 1997096 CAGAGATTGATCTTCGCAGGCAAACAACTCGAAGATGGGAGGACCTTGGCAGATTACAAT 1997155 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || || || || ||||| | || || | ||||| || || Sbjct 1997156 ATCCAGAAGGAGTCGACCCTTCATCTTGTTTTGCGTTTGAGGGGGGG 1997202 >seq2047 Length=1241070 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||||||||||||||| |||||||| |||||| |||| | || ||| || ||| | ||| Sbjct 887324 GACAAAGAAGGCATACCGCCCGATCAGCAGAGATTGATATTCGCCGGTAAACAATTGGAA 887265 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTAC 24187 |||| | ||||| || |||||||| || || |||||||| || Sbjct 887264 GATG-GACGAACGTTGGCGGATTATAATATCCAGAAAGAATCGAC 887221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429924409462860