Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2167 109 5e-19 seq310 102 7e-17 seq2135 98.7 8e-16 seq582 87.8 2e-12 >seq2167 Length=1051226 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||||||||| || || || | || ||||| || || || | ||| || || || Sbjct 203986 ATGCAAATTTTCGTAAAGACATTGACTGGAAAGACAATCACTTTGGAAGTTGAAAGTTCA 203927 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || || ||||| || |||||||| |||| || Sbjct 203926 GACACAATC---GACAATGTCAAGGCGAAAATCCAGGACAAAGAAGGTATCCCTCCAGAC 203870 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| || || || | ||||||| | ||| | ||||||||| Sbjct 203869 CAGCAAAGACTGATCTTTGCCGGTAAGCAGCTCGAAGATGGTAGAACACTTGCCGATTAT 203810 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||||||| ||||| ||| | ||| ||||| || ||||| ||||||||| Sbjct 203809 AACATTCAAAAGGAGTCGACTCTTCATTTGGTGCTGCGATTGAGAGGAGGAA 203758 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/235 (69%), Gaps = 14/235 (6%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACC------GTCGAAACGGA 115338 |||||| |||||||| || || | || ||||| || || || ||||||| Sbjct 204443 AATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACAATCACTTTGGAGGTCGAAA---- 204388 Query 115339 GTCCAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCG 115397 || ||| ||| | ||||| || ||| ||||| || |||||||| |||| Sbjct 204387 GTTCAGACACAATC---GACAACGTTAAAGCCAAAATCCAAGACAAAGAAGGGATCCCTC 204331 Query 115398 TTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCG 115457 || ||||||||||| || | ||| || || ||| | ||||||| | ||| |||| | Sbjct 204330 CAGACCAGCAAAGACTGATCTTTGCCGGAAAGCAACTTGAAGATGGTAGAACATTGGCGG 204271 Query 115458 ATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||| ||||||||||| || || ||| | ||| | |||||| | ||| | || || Sbjct 204270 ATTACAACATTCAAAAGGAATCAACTCTCCATCTTGTGTTGCGGTTGAGGGGTGG 204216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 |||||||| || ||||| || | || ||||| || ||||| | ||| || || || Sbjct 204214 ATGCAAATCTTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTCGAAAGTTCA 204155 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || ||| ||||| || ||||||||| |||| || Sbjct 204154 GACACAATC---GACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCGGAC 204098 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| || || || | ||||||| || ||| |||| ||||| Sbjct 204097 CAGCAAAGACTAATCTTTGCAGGTAAGCAGCTCGAAGATGGCAGAACGCTGGCTGATTAC 204038 Query 115463 AACATTCAAAAAGAGTCTACT 115483 || ||||| ||||| || ||| Sbjct 204037 AATATTCAGAAAGAATCGACT 204017 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || | || ||||| || || || | ||| ||| Sbjct 210945 ATGCAAATCTTTGTCAAGACATTGACCGGAAAGACAATCACTTTAGAAGTTGAGAGTTCG 210886 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| | | |||| || || ||||| || |||||||| |||| || || Sbjct 210885 GACACTATCG-ACAATGTTAAGGCGAAAATCCAAGACAAAGAAGGAATCCCACCCGACCA 210827 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | || | ||| || || || | ||||||| | || | ||||||||||| Sbjct 210826 GCAGAGATTGATCTTTGCAGGTAAGCAGCTGGAAGATGGTAGGACGCTTGCCGATTATAA 210767 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| ||||| ||||| ||| | ||| |||| || | ||| | ||||||| Sbjct 210766 CATCCAAAAGGAGTCGACTCTTCATTTGGTACTGCGGTTGAGGGGAGGAA 210717 >seq310 Length=2395884 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| |||||||| ||||| || |||||||| || | || ||| | Sbjct 1996292 ATGCAAATTTTCGTCAAAACTCTCACCGGTAAAACCATCACTCTTGAGGTTGAGAGCTCA 1996351 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| ||||| ||| || ||||| |||||| ||||| ||| || Sbjct 1996352 GACAC-AATCGACAATGTAAAGGCAAAGATCCAAGATAAGGAAGGCATCCCCCCTGACCA 1996410 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||| | |||| ||| || || ||| | ||||||| || |||| | || ||||| || Sbjct 1996411 GCAGAGATTGATTTTTGCTGGTAAGCAACTTGAAGATGGCAGAACCCTTGCAGATTACAA 1996470 Query 115465 CATTCAAAAAGAGTCTAC 115482 || || || ||||| || Sbjct 1996471 TATCCAGAAGGAGTCCAC 1996488 >seq2135 Length=1067647 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||||||||| || ||||| ||||| ||||| ||| | || |||| | | Sbjct 902733 ATGCAGATTTTTGTCAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTGGAGAGCTCC 902792 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | ||||| || ||| || ||| || || ||||| |||| || || Sbjct 902793 GACAC-GATTGACAACGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCGGACCA 902851 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || || || | ||| || || || || || |||| || |||| || || || Sbjct 902852 GCAGAGGCTGATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGCACTTTGGCGGACTACAA 902911 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| ||||| ||| | || ||||| |||| ||| | ||||| Sbjct 902912 TATTCAAAAGGAGTCCACTCTTCACTTGGTGCTGAGGTTGAGGGGAGG 902959 >seq582 Length=2128859 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| ||||| || || || || || ||||| ||| ||||| |||| | | Sbjct 298760 ATGCAGATTTTCGTCAAGACCCTTACTGGGAAGACCATCACCCTCGAAGTGGAGAGCTCC 298819 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || || || || |||||| | ||| ||||| Sbjct 298820 GACACCATTG-ACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCA 298878 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||| | || | ||| || || || | || |||| || |||| |||||||| Sbjct 298879 GCAAAGATTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGTACTTTGGCAGATTATAA 298938 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGT 115494 ||| || || |||||||| | ||| |||| Sbjct 298939 CATCCAGAAGGAGTCTACACTGCATTTGGT 298968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425332533257440