Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq504 158 2e-33 seq20 149 8e-31 seq848 107 2e-18 seq1991 89.7 7e-13 >seq504 Length=2204878 Score = 158 bits (174), Expect = 2e-33 Identities = 570/877 (65%), Gaps = 20/877 (2%) Strand=Plus/Plus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || || ||||| || || | || || || || || |||||||||| || || Sbjct 1297266 TTCTGATATTCTCCAACCCTCTTCTCAAAGAAGTTTGTTTTACCTTGCAAGCTAATCAGC 1297325 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| |||| |||||||| ||||| || || || | |||||||| || | | Sbjct 1297326 TCCATCCAATCAAATGGATTCTGCACATTGTACATCTTCCCACATCCCAATGCATTCAGC 1297385 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AAG 32548 ||||||||||| |||||||| || || |||||||||| | ||||| || | || Sbjct 1297386 AATCTATCTGCTACAAATTCAATGTACTGGCTCATCATTTCTCCGTTCATCCCCACCAAC 1297445 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 || || || || || | ||| || ||| || ||||||| | | || Sbjct 1297446 GCGCAC-GGCAGCGCGTCACACACAAACTCCCTTTCTATTTCCACCGCGTTCGCCACTAT 1297504 Query 32609 AGATCTTACTGTTTCTTCACTCGG-TGGATA--CAATAAA-TGTTTAAACATCAAACATG 32664 | ||| | || || ||| | | || ||| | | ||| ||| || || | Sbjct 1297505 CCCCTTCACTTTCTCCTCGCTCAGCTTCATCTTCAACAGACTGT----ACAGCAGGCACG 1297560 Query 32665 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 32724 ||||||||||||| | ||||||||| | | |||||| ||||| || || || | || | Sbjct 1297561 CGAAATCGCAGTGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGAAAGTCAACCCCG 1297620 Query 32725 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATT 32783 |||| || || ||||| || ||||| || |||| |||| || ||| || ||||| ||| Sbjct 1297621 GCATCAGCCCCCGCTTCTTCAGCCAGAAGATGG-CGCAGAAGCTTCCGGAGAAGAATATT 1297679 Query 32784 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--AT-AACCGGCGCTGTCATGTATC 32840 || || || || ||||| | || || |||| | || | ||| || |||| ||| Sbjct 1297680 CCCTCCACGCAGGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGAGCCGTCA---ATC 1297736 Query 32841 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 32900 || | ||||||| ||||||||| | || || || | || || || || ||| Sbjct 1297737 CAGCGGAGCGCCCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCGATTGCGCGGAAG 1297796 Query 32901 AGATAGtttttttCATTACTA-TCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 || | ||| || || || | || || | || | || | | ||||| ||||| || Sbjct 1297797 AGGTGGTTCTTCTC-CGACGAGTCCTTGATGTAAGCCTCGAGGAGGAGACTGTACATCTC 1297855 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTG 33019 || || ||||| || ||||| ||||| || ||||||||| | ||||| | ||||| Sbjct 1297856 GGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGCCTCTGAGATCTG 1297915 Query 33020 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33079 || || | || ||| | || | ||| || || || ||||| ||| || || Sbjct 1297916 GACGTCCTTCATGAAACGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAA 1297975 Query 33080 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 33139 || || | || ||||| || |||| | ||| | | | || | ||| | Sbjct 1297976 GAAGGCGAGGACGTGTTTGATGAAATGCTGCTCGCCGGAGGAGAGGGTTACCCAGTGGCG 1298035 Query 33140 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33199 || || | || | ||| ||||| || | ||||| || || || | || || || || Sbjct 1298036 GAGGTCGTCGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTGGGCTTTCTTGTA 1298095 Query 33200 CATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 ||| | |||||| ||| |||| ||||| || || ||| Sbjct 1298096 CATCTCCCAGATTTCAGGATACTGAATCGGGAACATA 1298132 >seq20 Length=956477 Score = 149 bits (164), Expect = 8e-31 Identities = 380/576 (66%), Gaps = 2/576 (0%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||||||||| ||||| ||||| | || || ||||| || || || | Sbjct 870746 CACGCGAAATCGCAGTGCAGACCTTCGTCACGCGATATCAACTCGTTCGAGAAAGTCAAC 870805 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||| || || ||||| || ||||| ||||||| |||| | | | || || ||||| Sbjct 870806 CCCGGCATCAGACCGCGCTTCTTCAGCCAGAATATGG-CGCAGAAGCTTCCGGAGAAGAA 870864 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 || ||||| || || || || || | | ||| | ||| ||| | | | || Sbjct 870865 TATCCCTTCCACGCAGGCGAACGCGATTATCCGCTCGGCGAAACACTCGCCGCCGTCGAT 870924 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||| | ||||||| ||||||| | | || || || | ||||| || || || Sbjct 870925 CCAGCGGAGTGCCCAATTGGCCTTCCTCTCCACGCAGGGGACGGTCTCGATTGCGCGGAA 870984 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 ||| ||| || || | ||| || | || | || | | || || ||||| || Sbjct 870985 GAGCCTGTTCTTCTCGTCGGAATCCTTTATGTAGGATTCGAGGAGGAGGCTGTACATCTC 871044 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTG 33019 || || |||||||| || || || || || ||||||||| | || || | ||||| Sbjct 871045 GGAGTGTATGTTTTCGATTGCGATCTGGAAACCGTAGAAGGCGCGGGCTTCCGAGATCTG 871104 Query 33020 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 33079 || || | || ||| | |||| ||||| || || ||||| ||| || || Sbjct 871105 CACCTCCTTCATGAAGCGTCCGGCTAGGTTTTCCAGGACGATGCCGTCGGAGGCGGCGAA 871164 Query 33080 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 33139 || |||| || ||||| || |||| || ||||| | | ||| | | ||| | Sbjct 871165 GAAGGCCAGAACGTGTTTGATGAAATGCTTCTCGTCGGTGGATAGGGTTTCCCAGTGGCG 871224 Query 33140 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33199 || || | || | ||| ||||| || | ||||| || || || || |||||||| || Sbjct 871225 GAGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTA 871284 Query 33200 CATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 ||| | ||| || | | |||||||||||||| || Sbjct 871285 CATCTCCCAAATTTGTGGGTATTGAATTGGAAACAT 871320 >seq848 Length=4381129 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| |||||||| | || ||||| || ||||| |||||| || ||| | |||| | Sbjct 3844255 GTTCCAGCATTAAAAAGAGTCGGAGATGCATGAGTGAACCATCGTTGAGACAACAGATGG 3844314 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||| | ||| ||| ||| ||||| || || || || || | || | ||||||| Sbjct 3844315 TACGTTTTTATAACTGCGTCGATATCATCTTTGTGTATACCAACAGAAACTCTCATTAAC 3844374 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||||||||| |||||||| | ||| | | || | | ||| || |||| | Sbjct 3844375 ATGTGCTGAGGCCTTTCAACAACCTTCCCTTGGACCTTTAGGAGGTAAGACCTTTCGAGC 3844434 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| |||||||| | | |||| |||||||| || || || || Sbjct 3844435 GTTTTGAAACCAAAGAAATCGTATTCAAAGTCTCTGTCATATATTAT 3844481 >seq1991 Length=3980371 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| ||||| || ||||| ||||| || ||| | |||| Sbjct 852655 GTTCCAGCATTGAAAAGGGTGGGAGATGCATGAGTGAACCACCGTTGAGACAAAAGATGA 852714 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||| | |||| ||| || ||||| || || || || || | || | ||| ||| Sbjct 852715 TACGTTTTAATAACTGCATCGATATCATCTTTGTGGATACCGACAGAAACTCTCATCAAC 852774 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||| || || |||||||| | ||| | | || || | ||| || |||| | Sbjct 852775 ATGTGTTGTGGCCTTTCAACAACCTTCCCTTGGACCTTTAAAAGGTAAGACCTTTCGAGG 852834 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||||||||||| | | ||| ||||||| ||||| || || Sbjct 852835 GTTTTAAAACCAAAGAAATCATATTCGAAGTCTCTGTCGTATATTAT 852881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633614480075200