Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1832 269 3e-67 seq385 219 5e-52 seq513 163 3e-35 seq928 152 6e-32 seq617 82.4 9e-11 >seq1832 Length=4053948 Score = 269 bits (298), Expect = 3e-67 Identities = 344/474 (73%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 167480 ACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 167539 ||||| ||||| || ||||||||| | | | | |||||| | | |||| |||||| Sbjct 887146 ACGGCCGCAGTTTCCACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 887205 Query 167540 CCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTG 167599 ||||| | || || ||||| | | ||||| || | || || || ||| ||||||| Sbjct 887206 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 887265 Query 167600 GCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGA 167659 || || || || || || | || ||||| || ||| | || ||||||||| | | || Sbjct 887266 GCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGA 887325 Query 167660 CTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTG 167719 || | || ||||| ||||| || || ||||||||||| |||| ||| ||||| Sbjct 887326 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTTTCTGGTCCAATTGTTGTTTTTGTT 887385 Query 167720 TCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGT 167779 | ||| || || || ||||| || || ||||| |||||||||||||||| |||||| Sbjct 887386 TATGTATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGT 887445 Query 167780 GTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAAC 167839 | ||||| |||||| ||||| | || || | || || || ||||| |||||| | ||| Sbjct 887446 ATAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAAC 887505 Query 167840 CCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCAT 167899 || || ||||||||||||||||| ||| | | || | ||| ||||| | || || ||| Sbjct 887506 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCAT 887565 Query 167900 GGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTC 167953 |||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 887566 GGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 887619 Score = 269 bits (298), Expect = 3e-67 Identities = 344/474 (73%), Gaps = 0/474 (0%) Strand=Plus/Plus Query 167480 ACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 167539 ||||| ||||| || | ||||||| | | | | |||||| | | |||| |||||| Sbjct 906901 ACGGCCGCAGTTTCCAATCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 906960 Query 167540 CCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTG 167599 ||||| | || || ||||| | | ||||| || | || || || ||| ||||||| Sbjct 906961 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 907020 Query 167600 GCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGA 167659 || || || || || || | || ||||| || ||| | || ||||||||| | | || Sbjct 907021 GCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGA 907080 Query 167660 CTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTG 167719 || | || ||||| ||||| || || ||||||||||| |||| ||| ||||| Sbjct 907081 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTTTCTGGTCCAATTGTTGTTTTTGTT 907140 Query 167720 TCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGT 167779 | ||| || || || ||||| || || ||||| ||||||||||||||| |||||| Sbjct 907141 TATGTATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACTTAGTTTTGGT 907200 Query 167780 GTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAAC 167839 || ||||| |||||| ||||| | || || | || || || ||||| |||||||| ||| Sbjct 907201 GTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAAC 907260 Query 167840 CCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCAT 167899 || || ||||||||||||||||| ||| | | || | ||| ||||| | || || ||| Sbjct 907261 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCAT 907320 Query 167900 GGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTC 167953 |||| ||| ||||| |||||| | | |||||||||||| ||||| || ||| Sbjct 907321 GGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 907374 Score = 237 bits (262), Expect = 2e-57 Identities = 259/344 (75%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 167969 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTT 168028 ||||| | || |||||||||||||||||||| |||||||| || ||||| ||||| ||| Sbjct 890366 ACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAACCGTTTTTGGTCCCAAATCTTT 890425 Query 168029 GGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATG 168088 || ||||||| |||||| |||||||| || ||||||||| | || || || || | Sbjct 890426 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 890485 Query 168089 GGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGAC 168148 || | |||| ||| || |||| | |||| | || || || || ||||| |||||| Sbjct 890486 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCTTGGCCCTGAACCTACGTGCCTATGAC 890545 Query 168149 TTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAA 168208 || || ||||||||| || | ||||| || ||||| || ||||| |||||||| || ||| Sbjct 890546 TTCGTTTCTCAGGAAATTCGCGCAGCGGAAGATCCGGAATTTGAGACTTTCTACACCAAA 890605 Query 168209 AACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAA 168268 || || || | || ||||| | ||||| |||||||| | ||| || || |||||| Sbjct 890606 AATATTCTATTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 890665 Query 168269 AACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 ||| || ||||||| || || || | ||| | || |||||||| Sbjct 890666 AACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 890709 Score = 190 bits (210), Expect = 2e-43 Identities = 325/468 (69%), Gaps = 9/468 (2%) Strand=Plus/Minus Query 167813 CAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTA 167872 || || || ||||| |||||||| ||| || |||||||| |||||| | | | | | Sbjct 2037650 CAAGGATTTCATAATTGGACGCTGAACTTATTTCATATGATCGGAGTTTCCGATGTATTG 2037591 Query 167873 GGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGAT 167932 || | ||| || || | || || ||||||| ||| | ||| |||||| | | ||||||| Sbjct 2037590 GGGGCTGCTTTCCTATGTGGTATTCATGGTGATACCGAAGAAAATACTTTATTTGAAGAT 2037531 Query 167933 GGTGAGCAAGCAAACACTTTCAAAGC---ATTTGATACG-ACTCAGGAAGAGGAAACTTA 167988 ||||| ||||| || | || | ||| || || ||||| | || |||||||| Sbjct 2037530 GGTGATGGTGCAAATACGTACATTTCGTGCTTTTATCCGAACTCAAGCTGAAGAAACTTA 2037471 Query 167989 TTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAA 168048 || ||||||||| ||| |||| || ||||| |||| ||||| ||||||| | || Sbjct 2037470 TTACATGGTCACCGCTGACCGCTTTTGGTCCTAAATCTTTGGGGTTGCTTTTTTTACTAG 2037411 Query 168049 GCGTTGGTTGCACTTCTTTATGCTTTTCGTTC---CT--GTCATGGGACTTTGGACAAGT 168103 |||||||| | ||||||||| | || || | || || | || | |||| ||| Sbjct 2037410 AGGTTGGTTGAATTTCTTTATGTTATTTGTACAAGCTAAGTAACCGGTTTATGGATGAGT 2037351 Query 168104 TCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAA 168163 || |||| | |||| | || | || || || |||||||||||||| ||||||||| Sbjct 2037350 GCTCTTGGAGTAGTCGGCTTGGCCATGAACCTACGCGCTTATGACTTTGTTTCTCAGGAA 2037291 Query 168164 GTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAAT 168223 || | || | | |||||||| | || |||| |||| || |||||||| || | || Sbjct 2037290 TTTGGCGCCGTGAAAGATCCAGAATCTGGAACTCTCTACACCAAAAACATTCTTTTAAAC 2037231 Query 168224 GAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAAC 168271 ||||| | || |||| ||| | ||| | || ||||||||| Sbjct 2037230 GAAGGTATTTGTATTTGGAGGGCGGCTCAAGATTAGCCTCATGAAAAC 2037183 >seq385 Length=2344269 Score = 219 bits (242), Expect = 5e-52 Identities = 244/323 (76%), Gaps = 2/323 (1%) Strand=Plus/Plus Query 166595 TCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCA 166654 || ||||| | || ||||| ||||||||||| || || || ||| || ||||| || Sbjct 1147311 TCTATATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTT 1147370 Query 166655 GTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGT 166713 | || ||||| | | | | || | || ||||| |||| ||| ||| || | ||| Sbjct 1147371 CCTTGGTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 1147429 Query 166714 TACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGT 166773 |||| ||||||||||| ||||| || || || || || || ||||||||||| || || Sbjct 1147430 TACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGC 1147489 Query 166774 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCA 166833 || ||||||||||||| ||| |||||||| ||||| ||| | || |||||||| || Sbjct 1147490 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCGTTACATTTCTTCCTAGCT 1147549 Query 166834 GCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAAC 166893 || |||||||| || ||||||||||| |||||| | ||| | ||||| ||||| || ||| Sbjct 1147550 GCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTTAAC 1147609 Query 166894 CTCAACGGTTTCAACTTCAACCA 166916 || || ||||| || |||||||| Sbjct 1147610 CTAAATGGTTTTAATTTCAACCA 1147632 >seq513 Length=378260 Score = 163 bits (180), Expect = 3e-35 Identities = 216/300 (72%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 167470 TAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCT 167529 |||||| | ||||| ||||| || ||||||||| | | | | |||||| | | | Sbjct 131839 TAATTTCTTAACGGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTT 131780 Query 167530 ACTTTGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTG 167589 ||| ||||||||||| | || |||||||| | | ||||| || | || || || || Sbjct 131779 ACTATGGGGTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTG 131720 Query 167590 GGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGA 167649 | ||||||| || || || || || || | || ||||| || ||| | || |||||||| Sbjct 131719 GACTTTTGTTGCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGA 131660 Query 167650 GATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGC 167709 | | | || || | || ||||| |||| || || ||||||||||| ||||| Sbjct 131659 GCTTGCTCGATCTGTTCAATTGCGACCTTATGATGCAATCGCATTTTCTGGTCCAATTGC 131600 Query 167710 TGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACC 167769 ||| ||||| ||||| || || || ||||| || || ||||| |||||||||||||||| Sbjct 131599 TGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACC 131540 >seq928 Length=162397 Score = 152 bits (168), Expect = 6e-32 Identities = 345/510 (68%), Gaps = 13/510 (3%) Strand=Plus/Plus Query 167813 CAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTA 167872 || || || ||||| || ||||| ||| || |||||||| |||||| | | | | | Sbjct 115079 CAAGGATTTCATAATTGTACGCTGAACTTATTTCATATGATCGGAGTTTCCGATGTATTG 115138 Query 167873 GGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGAT 167932 || | ||| ||| | | || || ||||||| ||| | ||| |||||| | | ||||||| Sbjct 115139 GGGGCTGCTTTGTTATGTGGTATTCATGGTGATACCGGAGAAAATACTTTATTTGAAGAT 115198 Query 167933 GGTGAGCAAGCAAACACTTTCAAAGCAT-TTGATA--CG-ACTCAGGAAGAGGAAACTTA 167988 ||||| ||||| || | || | | || || || ||||| | || |||||||| Sbjct 115199 GGTGATGGTGCAAATACGTACATTTCGTGTTCTTAACCGAACTCAAGCTGAAGAAACTTA 115258 Query 167989 TTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGG----TATTGCTTTCAGCA 168044 || ||||||||| ||| |||| || |||| |||| ||||| ||| ||| | Sbjct 115259 TTACATGGTCACCGCTGACCGCTTTTGGTACTAAATCTTTGGGGTTGATTTTTTTTTTTA 115318 Query 168045 ATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTT 168104 || |||||||| | ||||||||| | || || | | | || | |||| ||| Sbjct 115319 CTACACGTTGGTTAAATTTCTTTATGTTATTTGTACAACTAACCGGTTTATGGATGAGTG 115378 Query 168105 CTATTGGTATCA-TCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAA 168163 || |||| | || |||| | || | || || ||| | |||||||| || ||||||||| Sbjct 115379 CTCTTGG-AGCAGTCGGCTTAGCCATGAACCTACGTCCATATGACTTGGTTTCTCAGGAA 115437 Query 168164 GTTAGAGCAG-CAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAA 168222 || | || | | |||||||| | || ||||||||| || |||| | || | || Sbjct 115438 ATTCGCGCCGTTTAAAGATCCAGAATCTGGAACTTTCTACACCAAAACAAATCTTTTAAA 115497 Query 168223 TGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCC 168282 ||||| | || |||||||| | ||| | || ||||||||| | |||| | Sbjct 115498 CGAAGG--TATTTGTTTGGATGGCGGCTCAAGATTAGCCTCATGAAAACCGTATATTGTC 115555 Query 168283 AGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 ||| || || | ||| || |||||||| Sbjct 115556 AGAGGAGGTTCTACCACCTGGAAACGCTCT 115585 >seq617 Length=2014290 Score = 82.4 bits (90), Expect = 9e-11 Identities = 165/245 (67%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | ||||| || || |||||||||||||| || Sbjct 804339 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGCTGGTCCGGC 804398 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 | | || ||||| ||| ||| | | | || | ||| | || | || || ||| Sbjct 804399 CCATTGCTCTTTCCTTGTGCCTATTTCTCTTTAGGGAGTTGGTTCACATGTACAACCTTT 804458 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTTTCTC 167479 || || |||||||||||||| ||||| | || | || || |||||| | Sbjct 804459 GTAACTTCATGGTATACCCACGGATTGGCCAATTCCTATTTGGAAGGCTGTAATTTCTTA 804518 Query 167480 ACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 167539 ||||| ||| | || ||||||||| | | | | |||||| | | |||| |||||| Sbjct 804519 ACGGCCGCAATTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 804578 Query 167540 CCTGA 167544 ||||| Sbjct 804579 CCTGA 804583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567216316035200