Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq20 194 2e-44 seq116 98.7 1e-15 seq2047 95.1 1e-14 seq343 93.3 5e-14 seq231 93.3 5e-14 seq94 93.3 5e-14 seq2166 91.5 2e-13 seq2161 89.7 6e-13 seq848 89.7 6e-13 seq464 87.8 2e-12 seq310 87.8 2e-12 seq306 87.8 2e-12 seq1758 86.0 7e-12 seq582 86.0 7e-12 seq254 86.0 7e-12 seq1286 82.4 9e-11 seq710 82.4 9e-11 >seq20 Length=956477 Score = 194 bits (214), Expect = 2e-44 Identities = 592/894 (66%), Gaps = 27/894 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||| || || || |||||| | || ||||||||||| ||||| || | Sbjct 870442 CATAACAGAAGCTTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTCTTCCCCTG 870501 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTC--ACCG 92905 || | |||| | | || | | | || |||| | || || |||| | ||| Sbjct 870502 CAGACTTATCAACTCCATCCAATCAAACGGGTTCTGAACATTGTACATCTTTCCGTACCC 870561 Query 92906 ATCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 || || | || |||||||| || || | || ||||||||| ||||| || | | Sbjct 870562 T--AATTCATTCAGCAATCTATCCGCCACGTACTCAATGTACTGACTCATCAGTTCTCCA 870619 Query 92966 TTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAAC 93024 ||||| || | | ||| || || || |||||| || || || |||| ||| |||| Sbjct 870620 TTCATCCCAACCA-ACGCGCACGGCAGCGCGTCGCACACAAACTCCCTCTCAATTTCAAC 870678 Query 93025 GGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGT--GGTTTTTGTACGACATAATTG 93082 || || || || | | ||| | || | | | | || | | | || || || Sbjct 870679 CGCGTCCGCCACTATCCCCTTCACTTT-CTCCTCGCTCAGCTTCATCTTCAGCA-AACTG 870736 Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 || | | |||||| || ||| || | ||||||||| || ||||||||||| || | Sbjct 870737 TAGAGCAGGCACGCGAAATCGCAGTGCAGACCTTCGTCACGCGATATCAACTCGTTCGAG 870796 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTACC 93201 || || || || || | ||| || || ||||| ||||| ||||| | ||| || || || Sbjct 870797 AAAGTCAACCCCGGCATCAGACCGCGCTTCTTCAGCCAGAATATGGC-GCAGAAGCTTCC 870855 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAAT--TTGCG 93259 || || ||||| ||||||||| || || || | || || ||||| ||| | || Sbjct 870856 GGAGAAGAATATCCCTTCCACGCAGGCGAACGCGATTATCCGCTCGGCGAAACACTCGCC 870915 Query 93260 GAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT 93319 | | | |||||| | ||||||| ||| || ||| | || || | || Sbjct 870916 G-----CCGTCGATCCAGCGGAGTGCCCAATTGGCCTTCCTCTCCACGCAGGGGACGGTC 870970 Query 93320 TCGATAGCGTTAAATAGG-TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||||| ||| || || | ||| |||||| ||||| |||||| | |||| | Sbjct 870971 TCGATTGCGCGGAAGAGCCTGTTCTT-CTCGTCGGAATCCTTTATGTAGGATTCGAGGAG 871029 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 || ||||| || || || | || || ||||| || ||||| |||||||| | Sbjct 871030 GAGGCTGTACATCTCGGAGTGTATGTTTTCGATTGCGATCTGGAAACCGTAGAAGGCGCG 871089 Query 93439 AGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATAC 93497 ||||||| ||||||||| || || | || || | | || ||||| ||| || | Sbjct 871090 GGCTTCCGAGATCTGCACCTCCTTCATGAAGCGTC-CGGCTAGGTTTTCCAGGACGATGC 871148 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTTTA 93556 | ||||| || || || || |||| | || || || ||||| ||||| || | || Sbjct 871149 CGTCGGAGGCGGCGAAGAAGGCCAGAACGTGTTTGATGAAATGCTTCTCGTCGGTGGATA 871208 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 | || ||||| | | || || | || | ||||||||| ||| | ||||| || || Sbjct 871209 GGGTT-TCCCAGTGGCGGAGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAG 871267 Query 93617 GCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATG 93670 ||||| || ||||||||||| ||||| || | | | |||||||||||||| ||| Sbjct 871268 GCTTCGGCCTTTTTGTACATCTCCCAAATTTGTGGGTATTGAATTGGAAACATG 871321 >seq116 Length=800046 Score = 98.7 bits (108), Expect = 1e-15 Identities = 79/94 (84%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 395362 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 395305 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| |||||||| ||||||||||||| Sbjct 395304 GCGTGGGTTCAAACCCCACTTCTGACAAATTATT 395271 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/97 (82%), Gaps = 7/97 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 402757 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 402700 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| |||||||| ||||| ||||||| || Sbjct 402699 GCGTGGGTTCAAACCCCACTTCTGAC-AATTATTTTT 402664 >seq2047 Length=1241070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/106 (81%), Gaps = 7/106 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 68539 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAGG 68482 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||||| |||||||| |||||||||| | || ||||||| Sbjct 68481 GCGTGGGTTCAAACCCCACTTCTGACAAATT-TGTTTTTAATTTTT 68437 >seq343 Length=2290462 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/108 (81%), Gaps = 7/108 (6%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGG 126319 |||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 1750842 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTAAGAG 1750785 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAA-ATTATTATTGGAATTTTT 126366 |||||||||| |||||||| ||||||| ||| || || | ||||| Sbjct 1750784 GGCGTGGGTTCAAACCCCACTTCTGACAATATTTTTTTTTTATTTTTT 1750737 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 832223 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 832166 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| || |||||| || Sbjct 832165 TTCAAATCCCACAGCTGTCATATTATTTTT 832136 >seq231 Length=2589472 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 154198 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 154139 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| |||||||| |||||| Sbjct 154138 GTGGGTTCAAACCCCACTTCTGACA 154114 >seq94 Length=2859111 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/109 (80%), Gaps = 5/109 (5%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 2160445 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 2160502 Query 126324 TGGGTTCGAACCCCACACCTGACA---AATTATTATTGGAATTTTTGTT 126369 ||||||| || |||||| ||| || |||| ||||| ||||||||| Sbjct 2160503 TGGGTTCAAATCCCACAGCTGTCAAACAATTTTTATTATTATTTTTGTT 2160551 >seq2166 Length=3510597 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/98 (82%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 154594 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 154651 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| |||| ||||| | |||||| Sbjct 154652 TTCAAATCCCACAGCTGTCAAAATATTACT--AATTTT 154687 >seq2161 Length=1044716 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 454240 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 454183 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||||||| || ||||| |||||||||| ||| Sbjct 454182 CGTGGGTTCAAATCCCACTTCTGACAAATTTTTA 454149 >seq848 Length=4381129 Score = 89.7 bits (98), Expect = 6e-13 Identities = 80/99 (81%), Gaps = 6/99 (6%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA-- 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 255326 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGA 255383 Query 126321 --GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| |||||| || ||||| Sbjct 255384 GGGCGTGGGTTCAAATCCCACTTCTGACATTTTTTTATT 255422 >seq464 Length=448992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 6/88 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 394993 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 395050 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||| |||||||| ||||||| Sbjct 395051 GCGTGGGTTCAAACCCCACTTCTGACAA 395078 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 6/89 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 398283 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 398340 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||| || ||||| |||||||| Sbjct 398341 GCGTGGGTTCAAATCCCACTTCTGACAAA 398369 >seq310 Length=2395884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/101 (80%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1912003 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1911946 Query 126328 TTCGAACCCCACACCTGACAA--ATTATTATTGGAATTTTT 126366 ||| || |||||| ||| ||| ||| || || ||||||| Sbjct 1911945 TTCAAATCCCACAGCTGTCAAATATTTTTTTTAAAATTTTT 1911905 >seq306 Length=549116 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/109 (80%), Gaps = 9/109 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 125571 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 125628 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||| || ||||| ||||||| |||| || | |||||||| Sbjct 125629 GCGTGGGTTCAAATCCCACTTCTGACAA--TATT-TTTTATTTTTTGTT 125674 >seq1758 Length=1547149 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 117221 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 117278 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||| || |||||| ||| || ||||| Sbjct 117279 TGGGTTCAAATCCCACAGCTGTCATTTTATT 117309 >seq582 Length=2128859 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/103 (80%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1950363 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1950306 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| ||| | ||| || ||||||||| Sbjct 1950305 TTCAAATCCCACAGCTGTCAATTAAATTTTTATCATTTTTGTT 1950263 >seq254 Length=613654 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/101 (80%), Gaps = 7/101 (7%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 581657 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 581600 Query 126328 TTCGAACCCCACACCTGACA---AATTATTATTGGAATTTT 126365 ||| || |||||| ||| || ||||||||| |||||| Sbjct 581599 TTCAAATCCCACAGCTGTCAGACCATTATTATT--AATTTT 581561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGGT 126328 || |||||||||||||||||||||||||||||| | |||||| || | |||||||| Sbjct 604527 AGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGGT 604470 Query 126329 TCGAACCCCACACCTGACAAATTAT 126353 || || |||||| ||| ||| |||| Sbjct 604469 TCAAATCCCACAGCTGTCAACTTAT 604445 >seq1286 Length=4106301 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 4090765 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 4090708 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 4090707 TTCAAATCCCACAGCTGTCAACTT 4090684 >seq710 Length=2067343 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1482133 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 1482190 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 1482191 GCGTGGGTTCAAATCCCACTTCTGACA 1482217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556845402798880