Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1336 111 3e-19 seq504 109 1e-18 seq1832 91.5 3e-13 seq677 91.5 3e-13 seq2053 89.7 1e-12 seq657 89.7 1e-12 seq143 89.7 1e-12 seq1977 87.8 4e-12 seq1955 87.8 4e-12 seq1694 87.8 4e-12 seq149 87.8 4e-12 seq89 87.8 4e-12 seq40 87.8 4e-12 seq2196 86.0 1e-11 seq928 86.0 1e-11 seq385 86.0 1e-11 >seq1336 Length=1690830 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 |||||| ||||| | || | ||| || ||||| ||||| |||||||| || |||||| Sbjct 296689 TTCAAGAGGAACTTTGTCAAGGAAGCAAAAGTCGCCCAGTTCTCTGGTTACGTGTCCGAA 296748 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 ||| | |||||||| || || |||||||| || | || | || |||||||| Sbjct 296749 CATTCCGCTTACCATCATGGAGAACAGAGTCTTGCTAGTACTATAATTGGTATGGCACAA 296808 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 || ||||| ||||| |||||||| || | || | || || |||||||||||| |||| Sbjct 296809 GATTATGTAGGCAGCAACAACATAAATCTTCTTTTGCCGAATGGTCAGTTTGGTACTCG 296867 >seq504 Length=2204878 Score = 109 bits (120), Expect = 1e-18 Identities = 315/477 (66%), Gaps = 6/477 (1%) Strand=Plus/Plus Query 251665 TCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA-CA 251723 ||||| ||||| || | ||||| | ||||| ||| |||||| || | || ||| || Sbjct 1297392 TCTGCTACAAATTCAATGTACTGGCTCATCATTTCTCCGTTCATCCCCACCA-ACGCGCA 1297450 Query 251724 AGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTT 251783 || | || ||||| | || ||| |||| | | || || | | |||| || |||| Sbjct 1297451 CGGCAGCGCGTCACACACAAACTCCCTTTCTATTTCCACCGCGTTCGCCACTATCCCCTT 1297510 Query 251784 CACCTGTGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTT 251842 ||| | || |||||| ||| || | |||||| || | ||| ||| | Sbjct 1297511 CACTTTCTCCTCGCTCAGCTTCATCTTCAACAGACTGTACAGCAGGCACGCGAAATCGCA 1297570 Query 251843 GGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCC 251902 | |||| ||||||||||||| || |||||||| || | | || || ||||||| || Sbjct 1297571 G-TGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGAAAGTCAACCCCGGCATCAGCC 1297629 Query 251903 CACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACAC 251962 | || ||| | ||||||||||| ||||| ||| ||| ||||| | | ||||| || | Sbjct 1297630 CCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAATATTCCCTCCACGC 1297689 Query 251963 ACACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGACAA-GAACTTCTGTGCC 252021 | | | || |||| ||||| || || || || || ||| | | ||| Sbjct 1297690 AGGCGAAGGCGACAATTCGCTCTGCGAATGA-TTCGGAGCCGTCAATCCAGCGGAGCGCC 1297748 Query 252022 CATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGC 252081 || |||||||| || ||||| ||||||||||| ||||| |||| | Sbjct 1297749 CAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCGATTGCGCGGAAGAGGTGGTTCTTC 1297808 Query 252082 TCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || | ||||| |||| || || || |||||| ||||||||| || |||||| Sbjct 1297809 TCCGACGAGTCCTTGATGTAAGCCTCGAGGAGGAGACTGTACATCTCGGAGTGGATG 1297865 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 1232783 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1232724 Query 142564 CCCAC 142568 ||||| Sbjct 1232723 CCCAC 1232719 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 1232946 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1232887 Query 142564 CCCAC 142568 ||||| Sbjct 1232886 CCCAC 1232882 >seq1832 Length=4053948 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 2059734 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 2059793 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 2059794 AGCCCCAC 2059801 >seq677 Length=266465 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 115705 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 115646 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 115645 AGCCCCAC 115638 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 137772 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 137713 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 137712 AGCCCCAC 137705 >seq2053 Length=3840293 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 1637244 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 1637185 Query 142562 GCCCCAC 142568 ||||||| Sbjct 1637184 GCCCCAC 1637178 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1637750 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1637691 Query 142563 CCCCAC 142568 |||||| Sbjct 1637690 CCCCAC 1637685 >seq657 Length=2055263 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 784727 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 784786 Query 142562 GCCCCAC 142568 ||||||| Sbjct 784787 GCCCCAC 784793 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 788972 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 788913 Query 142562 GCCCCAC 142568 ||||||| Sbjct 788912 GCCCCAC 788906 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 777313 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 777372 Query 142563 CCCCAC 142568 |||||| Sbjct 777373 CCCCAC 777378 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 788611 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 788670 Query 142564 CCCAC 142568 ||||| Sbjct 788671 CCCAC 788675 >seq143 Length=734535 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 270026 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 269967 Query 142562 GCCCCAC 142568 ||||||| Sbjct 269966 GCCCCAC 269960 >seq1977 Length=1443688 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1304494 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1304553 Query 142563 CCCCAC 142568 |||||| Sbjct 1304554 CCCCAC 1304559 >seq1955 Length=1519258 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 238063 ATTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 238122 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 238123 AGCCCCAC 238130 >seq1694 Length=1588062 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1195512 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1195571 Query 142563 CCCCAC 142568 |||||| Sbjct 1195572 CCCCAC 1195577 >seq149 Length=2637241 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1145810 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1145751 Query 142563 CCCCAC 142568 |||||| Sbjct 1145750 CCCCAC 1145745 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1146022 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1146081 Query 142563 CCCCAC 142568 |||||| Sbjct 1146082 CCCCAC 1146087 >seq89 Length=825377 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 313452 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 313393 Query 142563 CCCCAC 142568 |||||| Sbjct 313392 CCCCAC 313387 >seq40 Length=878603 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 678450 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 678509 Query 142563 CCCCAC 142568 |||||| Sbjct 678510 CCCCAC 678515 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 817315 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 817256 Query 142563 CCCCAC 142568 |||||| Sbjct 817255 CCCCAC 817250 >seq2196 Length=1003740 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 694094 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 694153 Query 142564 CCCAC 142568 ||||| Sbjct 694154 CCCAC 694158 >seq928 Length=162397 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGG-TTC 142559 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||| ||| Sbjct 71018 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTTC 70959 Query 142560 GAGCCCCAC 142568 ||||||||| Sbjct 70958 GAGCCCCAC 70950 >seq385 Length=2344269 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 832559 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 832618 Query 142564 CCCAC 142568 ||||| Sbjct 832619 CCCAC 832623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027807669820292