Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq310 123 2e-23 seq2167 91.5 1e-13 seq1098 82.4 5e-11 >seq310 Length=2395884 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || || || |||||| | ||| ||| | || Sbjct 1996520 ATGCAAATCTTTGTGAAAACCCTCACCGGAAAGACAATTACCCTTGAAGTCGAAAGCTCA 1996579 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||||| ||||| ||||| | ||| | |||| Sbjct 1996580 GACACCATTGACAATGTCAAGGCAAAAATTCAAGATAAGGAGGGAATTCCTCCAGACCAG 1996639 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || |||||||| || ||||| |||||| | ||| | || ||||||||| Sbjct 1996640 CAGAGATTGATATTTGCTGGGAAGCAACTGGAAGATGGCAGAACCCTTGCAGATTACAAT 1996699 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 || |||||||||||||| |||||| | || | ||||| Sbjct 1996700 ATCCAGAAGGAATCTACCCTTCATCTCGTGCTGCGTTT 1996737 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || || ||||||||||| |||| ||| | || Sbjct 1996976 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAAACCATTACATTGGAGGTTGAAAGCTCA 1997035 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| ||||||| || || ||||| | ||| | |||| Sbjct 1997036 GACACCATCGATAACGTGAAGGCAAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAG 1997095 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||| || ||||||||||| |||||| | || |||| ||||||||| Sbjct 1997096 CAGAGATTGATCTTCGCAGGCAAACAACTCGAAGATGGGAGGACCTTGGCAGATTACAAT 1997155 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 || |||||||| || || |||||| | || || ||||| Sbjct 1997156 ATCCAGAAGGAGTCGACCCTTCATCTTGTTTTGCGTTT 1997193 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || || ||||||||||| |||| ||| || Sbjct 1996748 ATGCAGATTTTCGTCAAGACTTTGACCGGAAAAACCATTACATTGGAGGTTGAAAGTTCA 1996807 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||| |||||| || || ||||| | ||| | |||| Sbjct 1996808 GACACCATTGATAACGTCAAGGCGAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCAG 1996867 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || ||||| ||||||||||| |||||| | || |||| ||||||||| Sbjct 1996868 CAGAGATTGATATTTGCAGGCAAACAACTCGAAGATGGGAGGACCTTGGCAGATTACAAT 1996927 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || || |||||| | || || ||||| | ||||| Sbjct 1996928 ATCCAGAAGGAGTCGACCCTTCATCTTGTTTTGCGTTTGAGGGGAGG 1996974 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || || || || || |||| |||| | Sbjct 1997432 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACTATCACTTTGGAGGTGGAAAGTTCT 1997491 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | | | || | ||| ||||| |||||||| || | ||||| | Sbjct 1997492 GATACGATTGACAATGTCAAGGCGAAAATCCAGGATAAAGAAGGGATCCCACCTG---AT 1997548 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||||| ||||||||||| ||||| || ||||||||| || | || ||||| Sbjct 1997549 CAACAGAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGTCGTACACTTGCGGATTAT 1997608 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATT 22065 ||||| ||||||||||| || ||||| | || | ||| | || || || |||| Sbjct 1997609 AATATCCAGAAGGAATCCACCCTTCACCTTGTGCTTCGTCTTCGTGGTGGTTATT 1997663 >seq2167 Length=1051226 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || ||||| || || || || ||||| ||||| ||| || Sbjct 204214 ATGCAAATCTTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTCGAAAGTTCA 204155 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| ||||| || ||||| || | ||| |||| Sbjct 204154 GACACAATCGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCAG 204095 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| |||||||| || || || || |||||| | ||| |||| ||||||||| Sbjct 204094 CAAAGACTAATCTTTGCAGGTAAGCAGCTCGAAGATGGCAGAACGCTGGCTGATTACAAT 204035 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| ||||| ||||| || Sbjct 204034 ATTCAGAAAGAATCGACTCTCCA 204012 >seq1098 Length=1756062 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || ||||| || ||||| |||| ||||| || || |||||||| ||||| ||||| Sbjct 778295 GACAAAGAAGGAATACCTCCTGACCAGCAGAGGCTGATATTTGCTGGTAAACAGTTAGAA 778354 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||| | |||| |||| ||||||||||| || || ||||| || ||||| Sbjct 778355 GATGGCAGAACTTTGGCAGATTACAATATCCAAAAAGAATCGACCCTTCA 778404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358115145403048