Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq20 224 2e-53 seq504 223 7e-53 >seq20 Length=956477 Score = 224 bits (248), Expect = 2e-53 Identities = 385/553 (70%), Gaps = 7/553 (1%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||| ||||| | |||| ||||||||||||||| | || || || ||||| Sbjct 871287 ATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGATTTGTCCCAGGAC 871228 Query 42369 A-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGC 42427 | ||| |||||| | || || |||| ||| |||| ||||| || | ||||| Sbjct 871227 CTCCGCCA-CTGGGAAACCCTATCCACCGACGAGAAGCATTTCATCAAACACGTTCTGGC 871169 Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 ||||||||||||||| |||||||| ||| || ||||| ||| | |||||||| || Sbjct 871168 CTTCTTCGCCGCCTCCGACGGCATCGTCCTGGAAAACCTAGCCGGACGCTTCATGAAGGA 871109 Query 42488 GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 ||||||| || || || ||| ||||||||| |||||||| || || || ||| | || Sbjct 871108 GGTGCAGATCTCGGAAGCCCGCGCCTTCTACGGTTTCCAGATCGCAATCGAAAACATACA 871049 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGG 42607 ||| ||| ||||| | || ||| | | ||||| |||| ||| |||| ||| | Sbjct 871048 CTCCGAGATGTACAGCCTCCTCCTCGAATCCTACATAAAGGATTCCGACGAGAAGAACAG 870989 Query 42608 GCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAA 42667 ||| ||| || || ||||| | |||||| | ||| |||||| | ||||| ||| Sbjct 870988 GCTCTTCCGCGCAATCGAGACCGTCCCCTGCGTGGAGAGGAAGGCCAATTGGGCACTCCG 870929 Query 42668 CTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGA 42727 ||||||||| | || || |||| |||| || | | || || || ||| || Sbjct 870928 CTGGATCGACGG---CGGCGAGTGTTTCGCCGAGCGGATAATCGCGTTCGCCTGCGTGGA 870872 Query 42728 GGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGA 42786 || || |||||||| || |||| | |||| |||||||| ||| || ||| | || Sbjct 870871 AGGGATATTCTTCTCCGGAAGCTTCTGCGCCATATTCTGGCTGAAGAAGCGCGGTCT-GA 870813 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 |||| || | || ||||||||||| | || | ||||| || ||||| | || | Sbjct 870812 TGCCGGGGTTGACTTTCTCGAACGAGTTGATATCGCGTGACGAAGGTCTGCACTGCGATT 870753 Query 42847 TTGCCTGCCTCCT 42859 | || ||||| || Sbjct 870752 TCGCGTGCCTGCT 870740 >seq504 Length=2204878 Score = 223 bits (246), Expect = 7e-53 Identities = 393/567 (69%), Gaps = 7/567 (1%) Strand=Plus/Minus Query 42297 GACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGAC 42356 || |||||| ||||||||||| || || |||| ||||||||||||||| | || Sbjct 1298110 GAAATCTGGGAGATGTACAAGAAAGCCCAAGCCTCCTTCTGGACCGCCGAGGAAGTCGAT 1298051 Query 42357 CTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415 || || | ||| | ||| ||||| | || || ||| || |||| |||| Sbjct 1298050 TTGTCCGACGACCTCCGCCA-CTGGGTAACCCTCTCCTCCGGCGAGCAGCATTTCATCAA 1297992 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 | || | || ||||||||||||||||| |||||||| || ||||| || ||| | Sbjct 1297991 ACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACG 1297932 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||||||| || || ||| || ||||| ||| ||||||||||||||| || ||||| Sbjct 1297931 TTTCATGAAGGACGTCCAGATCTCAGAGGCCCGCGCCTTCTACGGCTTCCAAATCGCCAT 1297872 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||||| ||| ||||| || ||| | | |||||| ||| | ||| Sbjct 1297871 CGAGAACATCCACTCCGAGATGTACAGTCTCCTCCTCGAGGCTTACATCAAGGA-CTCGT 1297813 Query 42596 C-GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 | ||| ||| || ||| || || || || | |||||| || |||||||||| Sbjct 1297812 CGGAGAAGAACCACCTCTTCCGCGCAATCGAAACTGTCCCCTGCGTCCAGAAGAAGGCCA 1297753 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCT 42714 | ||||||||| |||||| || | |||| | | |||| ||| | | || |||| Sbjct 1297752 ATTGGGCGCTCCGCTGGATTGACGGCTCCGA---ATCATTCGCAGAGCGAATTGTCGCCT 1297696 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | || ||| ||||| || |||||||| || |||| | ||||||||||||| ||| Sbjct 1297695 TCGCCTGCGTGGAGGGAATATTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGGCTGAAGA 1297636 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 || || | |||||| || | || ||||||||||| | || | |||||||| Sbjct 1297635 AGCGGGGGCTGATGCCGGGGTTGACTTTCTCGAACGAGTTAATTTCTCGCGACGAGGGTT 1297576 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGT 42861 |||| | || || || ||||| |||| Sbjct 1297575 TGCACTGCGATTTCGCGTGCCTGCTGT 1297549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944313089021120