Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2135 86.0 5e-12 >seq2135 Length=1067647 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||| ||||||| ||||| ||||||||||| || ||||||||||| || Sbjct 902503 CCACCCCTCAGCCTGAGCACCAAGTGAAGAGTGCTCTCCTTTTGGATGTTGTAATCCGCA 902444 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || || | |||||||| ||||| |||| | |||||| ||| || Sbjct 902443 AGAGTG-CGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCCGGGGG 902385 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 902384 AATGCCCTCCTTGTCC 902369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||| ||||||| ||||| ||||| ||||| || ||||||||||| | | Sbjct 902275 CCGCCCCTCAGCCTGAGCACCAAGTGAAGAGTGCTTTCCTTTTGGATGTTGTAATC-GGC 902217 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || || | || ||||| ||||| || ||||| |||| | |||||||||| Sbjct 902216 AAGAGTACGACCATCCTCCAACTGCTTCCCTGCAAAAATCAACCTCTGCTGATCC 902162 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||| || || || |||| || || || ||||||||||||||||||||| || Sbjct 902048 ACCACCTCTGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGC 901989 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || ||| |||| || | ||| ||||| ||||| |||| | |||||| ||| | Sbjct 901988 AAGAGTG-CGCCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCCGGGG 901930 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 901929 GAATGCCCTCCTTGTCC 901913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397051695694024