Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2167 111 1e-19 seq2135 109 4e-19 seq2047 89.7 4e-13 seq310 82.4 5e-11 >seq2167 Length=1051226 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| | ||||||||| || | ||| | ||| || ||||| || || || || || Sbjct 210946 GCCGCCCCTCAAACGCAGCACAAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCTGC 211005 Query 39552 CAAAACGCGTTC-ATCGTC--CAA-TTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | | |||| | |||| ||| ||||||||| |||| || || | |||||| |||| Sbjct 211006 AA----GTGTTCTACCGTCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCCG 211061 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | ||||||||||| |||||| ||||| | | | |||||||| |||| Sbjct 211062 GAGGGATCCCTTCTTTGTCCTGGATTTTTGCTTTAACATTATCAATTGTGTCTGAACTTT 211121 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||||||||| || || || || || || || ||||| |||||||| Sbjct 211122 CAACCTCCAAAGTAATCGTCTTTCCGGTCAACGTCTTAACGAAAATCTGCAT 211173 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 12/199 (6%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGC 39583 |||||| || ||||| ||||| |||| |||||| ||| || | || || || Sbjct 204023 TTCTTTCTGAATATTGTAATCAGCCA----GCGTTCTGCCATCTTCGAGCTGCTTACCTG 204078 Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA- 39642 |||| |||| | ||||| |||| || | |||||||||||| ||||| |||| Sbjct 204079 CAAAGATTAGTCTTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTAA 204138 Query 39643 -ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGT 39701 || |||| | |||||||| ||||| || ||||||||||| || || || || || || Sbjct 204139 CATTGTCG--ATTGTGTCTGAACTTTCGACTTCCAAAGTAATCGTCTTTCCAGTCAATGT 204196 Query 39702 TTTTACGAAGATCTGCATG 39720 || |||||||| |||||| Sbjct 204197 CTTGACGAAGATTTGCATG 204215 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || ||||| ||||| || | || |||| || | ||||||||| |||| Sbjct 211211 TCTTTCTGGATATTGTAATCCGCGAGGGTTCGCCCATCTTCGAGTTGTTTCCCAGCAAAG 211270 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCG 39646 || || | |||||||||| || | ||||||||||| ||||| |||| || Sbjct 211271 ATCAATCTTTGCTGATCCGGAGGAATCCCTTCTTTGTCCTGAATTTTCGCTTTAACATTA 211330 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| || ||||||| ||||| || ||||||||||| || || || || || || || | Sbjct 211331 TCGATA--GTGTCTGAACTTTCAACTTCCAAAGTAATCGTCTTTCCAGTCAATGTCTTGA 211388 Query 39707 CGAAGATCTGCAT 39719 |||| |||||||| Sbjct 211389 CGAATATCTGCAT 211401 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | ||| |||| || | ||| | ||| ||| ||||| || || ||||| || Sbjct 204215 GCCACCCCTCAACCGCAACACAAGATGGAGAGTTGATTCCTTTTGAATGTTGTAATCCGC 204274 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| | |||| || | ||| || ||| |||| || | | ||||| || | || Sbjct 204275 CAATGTTCTACCATCTTCAAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGAGG 204334 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| ||||| ||||| ||| | | | |||||||| ||||| | Sbjct 204335 GATCCCTTCTTTGTCTTGGATTTTGGCTTTAA-CGTTGTCGATTGTGTCTGAACTTTCGA 204393 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| ||||| || || || ||||| || || || |||||||| Sbjct 204394 CCTCCAAAGTGATTGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 204442 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| ||| ||||| |||||||| | ||| || ||||| || ||||||||||| Sbjct 203760 CCTCCTCTCAATCGCAGCACCAAATGAAGAGTCGACTCCTTTTGAATGTTATAATCGGC- 203818 Query 39553 AAAACGCGTT----CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | | ||| |||| || | || || ||| |||| || | | ||||| || | Sbjct 203819 ---AAGTGTTCTACCATCTTCGAGCTGCTTACCGGCAAAGATCAGTCTTTGCTGGTCTGG 203875 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTT 39666 || | ||||||||||| ||||| || || |||| | |||||||| ||| Sbjct 203876 AGGGATACCTTCTTTGTCCTGGATTTTCGCCTTGACATTGTCG--ATTGTGTCTGAACTT 203933 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || |||||||| ||||| || || || || || |||||||| || ||||| Sbjct 203934 TCAACTTCCAAAGTGATTGTCTTTCCAGTCAATGTCTTTACGAAAATTTGCAT 203986 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| |||||||||||||| | ||| || ||||| || ||||||||||| Sbjct 210719 CCTCCCCTCAACCGCAGTACCAAATGAAGAGTCGACTCCTTTTGGATGTTATAATCGGC- 210777 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 || || | |||| |||| || || || |||| || || | |||||| || | | Sbjct 210778 -AAGCGTCCTACCATCTTCCAGCTGCTTACCTGCAAAGATCAATCTCTGCTGGTCGGGTG 210836 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTC 39668 | | ||||||||||| ||||| ||| || |||| || ||||| | || || Sbjct 210837 GGATTCCTTCTTTGTCTTGGATTTTCGCCTTAACATTGTCGATA--GTGTCCGAACTCTC 210894 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCG 39723 || || ||||| ||||| || || || || || || || ||||| |||||| || Sbjct 210895 AACTTCTAAAGTGATTGTCTTTCCGGTCAATGTCTTGACAAAGATTTGCATGCCG 210949 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || |||||||||||||| | |||| | || || | |||||||| |||| Sbjct 203568 TCCTTCTGGATATTATAATCGGCAAGCGTGCGTCCGTCTTCGAGCTGTTTCCCAGCAAAG 203627 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCG 39646 || | | ||||| |||| || | ||||| || || | || ||| | | || | Sbjct 203628 ATGAGCCTTTGCTGGTCCGGTGGAATCCCTTCCTTATCTTGAATCTTTGCTTTCACATTG 203687 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | ||| || | || ||||| |||||||| || ||||| ||||| ||||| || | Sbjct 203688 TCG--ATTGTATCGGAACTCTCCACCTCCAAAGTGATCGTTTTGCCCGTCAAAGTCTTGA 203745 Query 39707 CGAAGATCTGCAT 39719 ||||||| ||||| Sbjct 203746 CGAAGATTTGCAT 203758 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || |||||||||||||| | |||| | || || | || ||||| |||| Sbjct 210527 TCCTTCTGGATATTATAATCGGCAAGCGTGCGTCCGTCTTCGAGCTGCTTCCCAGCAAAG 210586 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCG 39646 || | | ||||| |||| || | ||||| || || | || ||| | | || | Sbjct 210587 ATGAGCCTTTGCTGGTCCGGTGGAATCCCTTCCTTATCTTGAATCTTTGCTTTCACATTG 210646 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | ||| || | || ||||| |||||||| || ||||| ||||| ||||| |||| Sbjct 210647 TCG--ATTGTATCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCCGTCAAAGTCTTTA 210704 Query 39707 CGAAGATCTGCAT 39719 ||||||| ||||| Sbjct 210705 CGAAGATTTGCAT 210717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || ||||| ||||| || | || | || || | ||||||||| |||| Sbjct 211438 TTCTTTCTGGATATTGTAATCCGCGAGGGTTCGCCCGTCTTCGAGTTGTTTCCCAGCAAA 211497 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 |||| | ||||||||||| || | ||||| || || ||||| || | ||| Sbjct 211498 GATTAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAATTTTAGACTTGA-CGT 211556 Query 39648 CG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 | |||| || |||| ||| || || || | ||| || || ||||| || | |||||||| Sbjct 211557 TGTCTACGGTATCTGAGCTCTCGACCTCGAGAGTGATCGTCTTACCAGTAAGAGTTTTTA 211616 Query 39707 CGAAGATCTGCAT 39719 | || |||||||| Sbjct 211617 CAAATATCTGCAT 211629 >seq2135 Length=1067647 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| ||||| | || | || ||||| || | ||||||||| ||||| || || |||| Sbjct 902279 CATC-CCGCCCCTCAGCCTGAGCACCAAGTGAAGAGTGCTTTCCTTTTGGATGTTGTAAT 902221 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| | | || |||| ||||| || ||||| ||||||| || | ||||||||||| Sbjct 902220 CGGCAAGAGTACGACCATCCTCCAACTGCTTCCCTGCAAAAATCAACCTCTGCTGATCCG 902161 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | ||||| ||||| || || ||| | | | | ||||| | ||| | Sbjct 902160 GGGGAATCCCTTCCTTGTCTTGAATCTTGGCTTTGACGTTATCAATAGTGTCGGAGCTCT 902101 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || ||||| ||||| || || || || | ||| || || || |||||||| Sbjct 902100 CAACCTCCAAGGTAATGGTCTTCCCAGTGAGAGTCTTGACAAATATCTGCAT 902049 >seq2047 Length=1241070 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || ||||||||||| ||||| ||| |||| ||||||||||| ||| | || Sbjct 887226 TTCTTTCTGGATATTATAATCCGCCAACGTTCGTCCATCTTCCAATTGTTTACCGGCGAA 887285 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC 39626 || || | ||||||||| | |||| |||||||||||| Sbjct 887286 TATCAATCTCTGCTGATCGGGCGGTATGCCTTCTTTGTC 887324 >seq310 Length=2395884 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| ||||||| ||| |||| |||| ||| | || || ||||| |||||||||| Sbjct 1997434 CATC-CCGCCTCTCAACCGCAAAACCAGATGAAGCGTCGACTCCTTTTGGATATTATAAT 1997376 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | |||| || | || || || |||| || ||||| ||||| || | Sbjct 1997375 CTGCAAGTGTCCTCCCATCTTCGAGCTGCTTACCTGCAAAGATCAAACGTTGCTGGTCTG 1997316 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCT 39665 || | ||||| ||||| ||||| || || |||| | ||||||| || Sbjct 1997315 GAGGAATACCTTCCTTGTCTTGAATTTTCGCCTTCACATTGTCG--ATCGTGTCTGAACT 1997258 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||| || |||| ||||| ||||| || || ||||| || || || ||||||||| Sbjct 1997257 TTCAACCTCCAGTGTAATGGTTTTTCCGGTCAAAGTCTTGACAAAAATCTGCATG 1997203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347360235349796