Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq370 122 1e-22 seq422 104 3e-17 seq504 102 1e-16 seq20 96.9 4e-15 seq2203 82.4 9e-11 >seq370 Length=494299 Score = 122 bits (134), Expect = 1e-22 Identities = 231/335 (69%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAA 9282 |||||| ||||| | || || || || || || |||| |||||| || ||| | |||| Sbjct 303544 ATCAAGAATATCGGCTCGGTTAGTAGCTGCAATTACAATAATACCCGTGTTCCCT-TCAA 303602 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 | ||||||||||| || || || ||||| | || || |||| ||| || || | Sbjct 303603 AGCCATCCATCTCAGTTAAGAGCTGGTTCAACGTCTGCTCCCTTTCGTCGTTTCCACCAC 303662 Query 9343 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATG 9402 | ||||| | | ||| | ||||| |||||||| ||||| | || |||||||| | Sbjct 303663 CAATACCAGTCCCTCTCTGCCTCCCCACAGCATCAATTTCATCCACAAACACAATACAAG 303722 Query 9403 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAA 9462 | ||| || || | | || ||||| |||||||| || || || || |||| Sbjct 303723 GAGCATTCTCCTTTGCCTTCTTGAAAAGATCACGAACCCTCGAAGCACCGACTCCGACAA 303782 Query 9463 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9521 ||||||| ||||| | | ||||| || | || || || ||| || ||| |||||| Sbjct 303783 ACATCTCAACAAACTCCGAACCGGAA-ATCGAGAAAAACGGAACACCAGCTTCGCCCGCA 303841 Query 9522 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || ||| || | ||| ||||| || |||||||| Sbjct 303842 ATAGCTTTAGCCAAAAGGGTCTTTCCGGTACCTGG 303876 >seq422 Length=4557820 Score = 104 bits (114), Expect = 3e-17 Identities = 214/316 (68%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || ||||| || || ||||| || || || |||||||||||| | Sbjct 4441801 AAACCCATCCATTTCAGTCAAGAGCTGATTAATCGTCTGCTCTCGTTCATCATTCCCACC 4441742 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | ||| || | | ||| | ||||| |||||||||||||||||||| ||||| || Sbjct 4441741 CCCCATACCCGCCCCCCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATGCA 4441682 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || || | ||| | || || | ||| | ||||| || || |||||||| Sbjct 4441681 AGGCGCCTTCGCCTTGGCCTTCTCGAACAAATCCCTCACCCTAGAAGCACCTACACCAAC 4441622 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGC 9520 ||| | ||| ||||| | | ||||| || || || || || || ||||| || Sbjct 4441621 AAAAAGCTCAACAAATTCCGAAGCGGAGCACGAGAAAAACGGCACCCCAGCCTCACCAGC 4441562 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 | || | ||| | || ||||| || || || ||| ||| | | || |||| ||| Sbjct 4441561 CACCGCCCTGGCCAACAGCGTCTTCCCGGTTCCCGGCGGGCCCACCA-GAAGGCATCCCT 4441503 Query 9581 T-GGAATCTTGGCGCC 9595 | |||||||| || || Sbjct 4441502 TCGGAATCTTCGCACC 4441487 >seq504 Length=2204878 Score = 102 bits (112), Expect = 1e-16 Identities = 181/263 (69%), Gaps = 7/263 (3%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| | |||||| || || ||||| | || || ||||| | || ||||| || || Sbjct 1297571 GTGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGAAAGTCAACCCCGGCATCAGCCC 1297630 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||||| ||| | || |||||||| ||||||||||| || |||||||| || Sbjct 1297631 CCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAATATTCCCTCCACGCA 1297690 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA--GCGAGACTTTGTGTCAAACCATTTCATT 117462 || || || | || ||||| ||||| || ||| | ||||| ||| | Sbjct 1297691 GGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGAGCC-----GTCAATCCAGCGGAGC 1297745 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 117522 ||||| || |||||||||| | || || ||||||| ||| || || | || ||| Sbjct 1297746 GCCCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCGATTGCGCGGAAGAGGTGGTTC 1297805 Query 117523 TTTTCAGATCCATCCTTAATGTA 117545 || || || ||||| ||||| Sbjct 1297806 TTCTCCGACGAGTCCTTGATGTA 1297828 >seq20 Length=956477 Score = 96.9 bits (106), Expect = 4e-15 Identities = 304/463 (66%), Gaps = 20/463 (4%) Strand=Plus/Plus Query 116979 TTTCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTT 117038 |||| ||| || ||||||| |||||||||||| || |||||||| | || || || Sbjct 870454 TTTCTGATACTCACCAACTCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAGACTTATCAA 870513 Query 117039 TTCCATAAAGTCAAATGGATTCTTCGCGTTCCAAATGGGTG-GCACCCCAACTTGTTTGA 117097 ||||| | ||||| || |||| | || | || | | |||| || || || | Sbjct 870514 CTCCATCCAATCAAACGGGTTCTGAACATTGTACATCTTTCCGTACCCTAA-TTCATTCA 870572 Query 117098 GGAGACGATCCGACACATACTCAATGTACTCGGACATC--TTCTCAGAGTTCATACCGAT 117155 | | | ||||| ||| ||||||||||||| |||| ||||| ||||| || | Sbjct 870573 GCAATCTATCCGCCACGTACTCAATGTACTGACTCATCAGTTCTCCA--TTCATCCCAAC 870630 Query 117156 GAGATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCAC 117215 | || || || ||||| | | ||| | ||||||| |||||||| || ||| Sbjct 870631 CAACGCGCACGGCAGCGCGTCGCACACAAACTCCCTCTCAATTTCAACCGCGTCCGCCAC 870690 Query 117216 GATGGCGTGGATAGTTTCGGTAGTGGGTC-------TATTACGCAAAGTCTTGAAGAGCT 117268 || | | | |||| | | | || | || ||||| | | || || Sbjct 870691 TATCCCCTTCAC--TTTC--TCCTCGCTCAGCTTCATCTTCAGCAAACTGTAGAGCAGG- 870745 Query 117269 CCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATA 117328 |||| ||| || ||| ||||| || || || || || | || || ||||| | Sbjct 870746 -CACGCGAAA-TCGCAGTGCAGACCTTCGTCACGCGATATCAACTCGTTCGAGAAAGTCA 870803 Query 117329 GGCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGA 117388 || ||||| ||||| |||||||||| ||| | || |||||||| |||||||||| Sbjct 870804 ACCCCGGCATCAGACCGCGCTTCTTCAGCCAGAATATGGCGCAGAAGCTTCCGGAGAAGA 870863 Query 117389 AGATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 | || || ||||| || || ||||| | | ||||||||||| Sbjct 870864 ATATCCCTTCCACGCAGGCGAACGCGATTATCCGCTCGGCGAA 870906 >seq2203 Length=1028949 Score = 82.4 bits (90), Expect = 9e-11 Identities = 214/319 (67%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG- 9339 ||| || ||||| || ||||| || || ||||| || || || | ||||||||| || Sbjct 668709 AAACCCGTCCATTTCAGTCAAGAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCCTCC 668768 Query 9340 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 || | | || || | | ||| | ||||| ||||||||||||||||| || ||||| | Sbjct 668769 GCCCATC-CCGGCCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATGC 668827 Query 9400 ATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 | || |||||| || | || || ||||| | || || || || ||||| Sbjct 668828 AAGG--AGCTTTCGCCTTTGCCTTCTCGAACAGATCCCTCACTCTCGAAGCTCCAACACC 668885 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||| | ||||||||| | | || | ||| | ||| || ||| || ||| || Sbjct 668886 TACAAAAAGCTCCACAAATTCCGACGCCGCACAGGAAAAGAACGGTACACCAGCTTCGCC 668945 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 | || || | || || || || || || ||||| || ||| | |||| |||| | Sbjct 668946 GGAAACCGCCCTCGCCAGGAGGGTTTTTCCTGTACCAGGTGGGCCCACCAGGA-GGCAGC 669004 Query 9578 CCGT-GGAATCTTGGCGCC 9595 | | || ||||| ||||| Sbjct 669005 CTTTCGGGATCTTCGCGCC 669023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589964487030880