Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq385 167 3e-36 seq1832 87.8 3e-12 >seq385 Length=2344269 Score = 167 bits (184), Expect = 3e-36 Identities = 227/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 215840 ATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTT 215899 |||||||| || |||||||| ||||| || || | ||| ||| ||||| ||||| | Sbjct 1147316 ATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 1147375 Query 215900 GTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAG 215959 || || ||| | | ||||| || || || || | |||||| || | ||||||| Sbjct 1147376 GTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 1147435 Query 215960 TTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTC 216019 || || |||||||| ||||| || || || ||||| || || ||||| ||||| || | Sbjct 1147436 TTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATTG 1147495 Query 216020 ATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTC 216079 ||||||||||| || ||||||||| || | | || |||||||| || || | Sbjct 1147496 ATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCGTTACATTTCTTCCTAGCTGCTTGG 1147555 Query 216080 CCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAAC 216139 ||||| | |||||||| ||||| | ||| || |||||||| || ||||| || Sbjct 1147556 CCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTTAACCTAAAT 1147615 Query 216140 GGTTTCAACTTCAACCA 216156 ||||| || |||||||| Sbjct 1147616 GGTTTTAATTTCAACCA 1147632 >seq1832 Length=4053948 Score = 87.8 bits (96), Expect = 3e-12 Identities = 203/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 215398 ATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTT 215457 |||||| | ||| ||||| || ||||| || | || | || || ||| ||| | Sbjct 934717 ATTCATTGTTGCTCCTCCGGTAGATATTGATAGTATTCGTGAAAATATTTTTGGATCTCT 934658 Query 215458 AATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATT 215517 | | || || ||||| || ||||| |||||| |||| |||| ||| | |||| | Sbjct 934657 ACTTTACGGAAACAATATTATCTCAGGTGCTATTGTTCCTACTTCTGCAGGTATCGC--T 934600 Query 215518 ACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACC 215577 |||| ||||| || ||||||||| || | |||| |||||| | ||||||||||| || Sbjct 934599 GCACTCTTACCCAATATGGGAAGCAACATCCATTGATGAATGGTTATACAATGGTGGTCC 934540 Query 215578 TTTCCAACTGGTTATCTTCCACTTCCTCATTGGT---ATTTCTGCATACTGCGGAAGACA 215634 || |||| || | | ||||| | ||||| | || | ||| | | | Sbjct 934539 TTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAACTTGTTGTTACATGGTTCGTGA 934480 Query 215635 GTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACC 215694 |||||||||| || | | ||| |||| ||| |||||| ||| || || || || | Sbjct 934479 GTGGGAACTTAGTT-CCGTCTAGATATGCGACATTGGATTGCTGTGGCATATTCAGCTCA 934421 Query 215695 TGT 215697 ||| Sbjct 934420 TGT 934418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745060998493760