Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq385 167 7e-37 seq1832 80.6 8e-11 >seq385 Length=2344269 Score = 167 bits (184), Expect = 7e-37 Identities = 227/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 5374 || ||||| ||||| || || || ||||||||||||||| ||| || | || || | | Sbjct 1147632 TGGTTGAAATTAAAACCATTTAGGTTAAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 1147573 Query 5375 CATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAG 5434 || || | || || ||||||| ||| |||||||||||||| ||| |||||| || Sbjct 1147572 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAATGTAACGAACGAGAATTGTTGAAA 1147513 Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| ||| Sbjct 1147512 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTT 1147453 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGA 5554 ||||||||||| || ||| | || || | || ||| | | || ||||| | Sbjct 1147452 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 1147393 Query 5555 ATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACC 5614 || | |||||| || | |||||||||||| ||| | | || |||||||| Sbjct 1147392 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 1147333 Query 5615 CCAGCAACACCGAGCAT 5631 ||||| || || | ||| Sbjct 1147332 CCAGCTACGCCTAACAT 1147316 >seq1832 Length=4053948 Score = 80.6 bits (88), Expect = 8e-11 Identities = 169/247 (68%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 5780 GCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGG 5839 ||||||||||| || |||||| ||||||| ||| | | ||||||||||||| | Sbjct 934424 GCTGAATATGCCACAGCAATCCAATGTCGCATATCTAGACGG-AACTAAGTTCCCACTCA 934482 Query 5840 CGTCCCAAGTAAGCT---GCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGT 5896 || ||| |||| | | ||||| | ||||| | || | |||| || || Sbjct 934483 CGAACCATGTAACAACAAGTTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGA 934542 Query 5897 CCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTA 5954 || |||||||| | ||||||||| | ||| | ||||||||| || || || |||| | Sbjct 934543 CCACCATTGTATAACCATTCATCAATGGAT--GTTGCTTCCCATATTGGGTAAGAGTGCA 934600 Query 5955 ACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTA 6014 | || | || | || |||| || ||||| || || |||||||| || |||| Sbjct 934601 GCG--ATACCTGCAGAAGTAGGAACAATAGCACCTGAGATAATATTGTTTCCGTAAAGTA 934658 Query 6015 GAGATCC 6021 ||||||| Sbjct 934659 GAGATCC 934665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152645590276632