Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq385 158 4e-34 seq1832 114 4e-21 >seq385 Length=2344269 Score = 158 bits (174), Expect = 4e-34 Identities = 228/322 (71%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| ||||| || || || ||||||||||||||| || || | ||| || | | Sbjct 1147632 TGGTTGAAATTAAAACCATTTAGGTTAAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 1147573 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| |||||||||||||| ||| ||| || || Sbjct 1147572 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAATGTAACGAACGAGAATTGTTGAAA 1147513 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 1147512 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTT 1147453 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || ||||||| | || ||||| | Sbjct 1147452 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 1147393 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || |||||||| Sbjct 1147392 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 1147333 Query 25873 CCTGCAACACCGAGCATATGGA 25894 || || || || | ||||| || Sbjct 1147332 CCAGCTACGCCTAACATATAGA 1147311 >seq1832 Length=4053948 Score = 114 bits (126), Expect = 4e-21 Identities = 206/298 (69%), Gaps = 6/298 (2%) Strand=Plus/Plus Query 26032 ACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCC 26091 ||| | |||||||| || ||| ||||| | | ||| |||| | ||||||||||| Sbjct 934418 ACATGAGCTGAATATGCCACAGCAATCCAATGTCGCATATCTAGACGG-AACTAAGTTCC 934476 Query 26092 CATTGTCGTCCCAAGT---AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGA 26148 || | || ||| || || | | || | | |||||| | ||||| |||| | Sbjct 934477 CACTCACGAACCATGTAACAACAAGTTACACCAAGTAAAAAGTGTAGAACAATTAGTTCA 934536 Query 26149 TATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAG 26208 || || ||||| || || ||||| || || | || || |||||||| |||||||| || Sbjct 934537 TAAGGACCACCATTGTATAACCATTCATCAATGGATGTTGCTTCCCATATTGGGTAAGAG 934596 Query 26209 TGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAG 26268 || || |||| | ||| | || || || || |||||||| || |||||||| || Sbjct 934597 TGCAG--CGATACCTGCAGAAGTAGGAACAATAGCACCTGAGATAATATTGTTTCCGTAA 934654 Query 26269 AGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAA 26326 |||| | ||| | | | |||||||||| ||| ||||| || ||||| ||| ||| Sbjct 934655 AGTAGAGATCCAAAAATATTTTCACGAATACTATCAATATCTACCGGAGGAGCAACAA 934712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151989607508112