Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2135 134 1e-26 seq310 107 1e-18 seq2167 98.7 8e-16 seq582 98.7 8e-16 >seq2135 Length=1067647 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| |||| | |||||| || || ||||| || ||||| || |||||||| | Sbjct 902275 CCGCCCCTCAGCCTGAGCACCAAGTGAAGAGTGCTTTCCTTTTGGATGTTGTAATCGGCA 902216 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || ||||||||||| || ||||| |||| | ||| ||||||| |||| Sbjct 902215 AGAGTACGACCATCCTCCAACTGCTTCCCTGCAAAAATCAACCTCTGCTGATCCGGGGGA 902156 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| ||| || | | | || || || ||| ||| Sbjct 902155 ATCCCTTCCTTGTCTTGAATCTTGGCTTTGACGTTATCAATAGTGTCGGAGCTCTCAACC 902096 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || | ||| || ||||| |||||||| Sbjct 902095 TCCAAGGTAATGGTCTTCCCAGTGAGAGTCTTGACAAATATCTGCAT 902049 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | ||||| || || |||||||| ||||| || |||||||| | Sbjct 902731 CCACCCCTCAGCCTGAGAACCAAGTGAAGAGTGCTCTCCTTTTGGATGTTGTAATCGGCA 902672 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || ||||||||||| || ||||| ||||| | ||||| |||| || Sbjct 902671 AGAGTACGACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTTTGTTGGTCCGGTGGG 902612 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| ||| ||| | | | || || || ||| ||| Sbjct 902611 ATTCCTTCCTTGTCTTGAATCTTGGCTTTGACATTATCAATAGTGTCGGAGCTCTCAACC 902552 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| ||||| || || || || | ||| || ||||||||||||||| Sbjct 902551 TCCAAGGTAATGGTCTTCCCGGTGAGAGTCTTGACAAAAATCTGCATC 902504 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | |||||| || || |||||||| ||||| || |||||||| | Sbjct 902503 CCACCCCTCAGCCTGAGCACCAAGTGAAGAGTGCTCTCCTTTTGGATGTTGTAATCCGCA 902444 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || || | |||||| || ||||| |||| | ||| || |||| |||| Sbjct 902443 AGAGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCCGGGGGA 902384 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| ||| || | | | || || ||| ||| Sbjct 902383 ATGCCCTCCTTGTCCTGTATCTTAGCTTTAACGTTGTCAATGGTGTCGGAGCTCTCGACC 902324 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || ||||| || | ||| || ||||||||||||||| Sbjct 902323 TCTAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCATC 902276 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || || |||||| || || ||| ||| |||||||||||||| || | Sbjct 902959 CCTCCCCTCAACCTCAGCACCAAGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGCC 902900 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | ||| | || ||||||||||| || ||||| ||||| | ||| || |||| || Sbjct 902899 AAAGTGCGACCATCCTCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 902840 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| |||||| ||| || | | | || || ||||||| Sbjct 902839 ATTCCTTCCTTGTCTTGAATCTTGGCTTTGACGTTGTCAATCGTGTCGGAGCTCTCCACC 902780 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| || || || ||||| || | ||| || ||||||||||||||| Sbjct 902779 TCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCATC 902732 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || || || ||||||| ||| | | | || |||| ||| Sbjct 903164 ATGAAGGGTGGACTCCTTCTGTATGTTATAATCAGCAAGAGTCCTCCCATCTTCCAGCTG 903105 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || || ||||| |||| | ||| || |||| |||| |||||||| || |||||| Sbjct 903104 TTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGAATCCCCTCCTTATCCTGAATCTT 903045 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| || | | | || || ||||||||||| || || || || || || Sbjct 903044 AGCTTTGACGTTGTCAATGGTGTCCGAACTCTCCACCTCCAAAGTGATGGTCTTACCAGT 902985 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 |||||| || ||||| ||||||||| Sbjct 902984 CAAAGTCTTCACAAATATCTGCATC 902960 >seq310 Length=2395884 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || | |||||| |||| ||| ||||| ||| ||||| ||||| ||||| | Sbjct 1997430 CCGCCTCTCAACCGCAAAACCAGATGAAGCGTCGACTCCTTTTGGATATTATAATCTGCA 1997371 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | | || || | ||||||||| ||||| |||| || || || || | ||| Sbjct 1997370 AGTGTCCTCCCATCTTCGAGCTGCTTACCTGCAAAGATCAAACGTTGCTGGTCTGGAGGA 1997311 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || || ||| | | | ||||| || ||| Sbjct 1997310 ATACCTTCCTTGTCTTGAATTTTCGCCTTCACATTGTCGATCGTGTCTGAACTTTCAACC 1997251 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| |||||||| |||||||| || |||||||||||||| Sbjct 1997250 TCCAGTGTAATGGTTTTTCCGGTCAAAGTCTTGACAAAAATCTGCAT 1997204 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | ||||| || | ||| || || ||| || || ||||||||||| | Sbjct 1996975 GCCTCCCCTCAAACGCAAAACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCTGC 1996916 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | | | || || | || || || |||||||||| || ||| || || | || Sbjct 1996915 CAAGGTCCTCCCATCTTCGAGTTGTTTGCCTGCAAATATCAATCTCTGCTGGTCTGGAGG 1996856 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||| || || || | | | | ||||| || || Sbjct 1996855 AATTCCCTCCTTGTCTTGAATTTTCGCCTTGACGTTATCAATGGTGTCTGAACTTTCAAC 1996796 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| |||||||| |||||||| || || ||||||||||| Sbjct 1996795 CTCCAATGTAATGGTTTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 1996748 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | ||||| || | ||| || || ||| || || ||||||||||| | Sbjct 1997203 GCCCCCCCTCAAACGCAAAACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCTGC 1997144 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | | | || || | || || || || || |||| || ||| || || | || Sbjct 1997143 CAAGGTCCTCCCATCTTCGAGTTGTTTGCCTGCGAAGATCAATCTCTGCTGGTCTGGAGG 1997084 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||||||||||| ||| ||| || || | | | | ||||| || || Sbjct 1997083 AATTCCCTCCTTGTCTTGAATTTTTGCCTTCACGTTATCGATGGTGTCTGAGCTTTCAAC 1997024 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| |||||||| |||||||| || || ||||||||||| Sbjct 1997023 CTCCAATGTAATGGTTTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 1996976 >seq2167 Length=1051226 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| || ||||||||||||| || ||||| | || || | ||||| || ||||| Sbjct 204708 TCTTTCTGGATATTGTAATCAGCGAGGGTTCGACCATCTTCGAGTTGCTTGCCAGCAAAG 204767 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || || || |||| |||| ||| |||||||| |||||| ||| ||| | Sbjct 204768 ATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCTTTGACATTA 204827 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| ||| || || | || || || || || || | |||||| ||| Sbjct 204828 TCGATCGTATCTGAGCTCTCGACTTCAAGAGTGATGGTCTTCCCGGTAAGAGTTTTCACA 204887 Query 48756 AAAATCTGCATC 48767 |||||||||||| Sbjct 204888 AAAATCTGCATC 204899 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||||||||| | |||| ||| | ||| || || ||| ||||| || ||||| || | Sbjct 210946 GCCGCCCCTCAAACGCAGCACAAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCTGC 211005 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || ||| | |||| || | || || || ||||| |||| || ||| || |||| || Sbjct 211006 AAGTGTTCTACCGTCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCCGGAGG 211065 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || || ||||| || ||| ||| ||| | | | | ||||| || || Sbjct 211066 GATCCCTTCTTTGTCCTGGATTTTTGCTTTAACATTATCAATTGTGTCTGAACTTTCAAC 211125 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||| |||||||| ||||| ||||| || || || |||||||||||| Sbjct 211126 CTCCAAAGTAATCGTCTTTCCGGTCAACGTCTTAACGAAAATCTGCATC 211174 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||| ||||| | || | || |||| || | |||||| || ||||| Sbjct 210526 CTCCTTCTGGATATTATAATCGGCAAGCGTGCGTCCGTCTTCGAGCTGCTTCCCAGCAAA 210585 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | || || |||| |||| || ||||| || ||||||| ||| ||| Sbjct 210586 GATGAGCCTTTGCTGGTCCGGTGGAATCCCTTCCTTATCTTGAATCTTTGCTTTCACATT 210645 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || |||||||| ||||||||||| ||||| Sbjct 210646 GTCGATTGTATCCGAACTCTCCACCTCCAAAGTGATCGTTTTGCCCGTCAAAGTCTTTAC 210705 Query 48755 AAAAATCTGCAT 48766 || || ||||| Sbjct 210706 GAAGATTTGCAT 210717 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 ||||| || |||||| || ||||||||||| | || |||| | || || | || Sbjct 211199 TGTAGTGTAGACTCTTTCTGGATATTGTAATCCGCGAGGGTTCGCCCATCTTCGAGTTGT 211258 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| || || ||||||| |||| || || ||||| ||| || Sbjct 211259 TTCCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATCCCTTCTTTGTCCTGAATTTTC 211318 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | || ||||| || || |||| |||||||| ||||| ||| Sbjct 211319 GCTTTAACATTATCGATAGTGTCTGAACTTTCAACTTCCAAAGTAATCGTCTTTCCAGTC 211378 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 || || || || || ||||||||| Sbjct 211379 AATGTCTTGACGAATATCTGCATC 211402 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || ||||| ||||| | || | || |||| || | ||| Sbjct 203556 TGGAGGGTGGACTCCTTCTGGATATTATAATCGGCAAGCGTGCGTCCGTCTTCGAGCTGT 203615 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| || || | || || |||| |||| || ||||| || ||||||| Sbjct 203616 TTCCCAGCAAAGATGAGCCTTTGCTGGTCCGGTGGAATCCCTTCCTTATCTTGAATCTTT 203675 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | || || ||||||||||| || |||||||| |||||| Sbjct 203676 GCTTTCACATTGTCGATTGTATCGGAACTCTCCACCTCCAAAGTGATCGTTTTGCCCGTC 203735 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || ||||| Sbjct 203736 AAAGTCTTGACGAAGATTTGCAT 203758 >seq582 Length=2128859 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || ||||| || | | | | || | || ||| Sbjct 298284 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGGCCATCCTCC 298225 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||||||||| |||| ||| || |||| ||||| |||||||||||| | Sbjct 298224 AGCTGCTTTCCGGCAAATATAAGTCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGA 298165 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | | || || |||||||| | |||||||| ||| Sbjct 298164 ATTTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCCACCTCAAGGGTAATCGTCTTT 298105 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || || ||||| |||||||| Sbjct 298104 CCGGTGAGGGTCTTCACAAAGATCTGCAT 298076 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || ||||| ||||| || | | | | || |||| || Sbjct 299196 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGGCCGTCCTCA 299137 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||||| ||| || || | ||||| ||||||||||| Sbjct 299136 AGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 299077 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || ||||||||| | ||||| || ||| Sbjct 299076 ATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCCACCTCGAGGGTAATGGTCTTT 299017 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || ||||||||||| Sbjct 299016 CCAGTCAAGGTCTTGACGAAAATCTGCAT 298988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380927330398476