Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq504 163 5e-35 seq20 147 4e-30 >seq504 Length=2204878 Score = 163 bits (180), Expect = 5e-35 Identities = 382/573 (67%), Gaps = 5/573 (1%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| || || || | |||||| || ||||| || || | | |||| ||| Sbjct 1297548 TACAGCAGGCACGCGAAATCGCAGTGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAG 1297607 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || | || ||||| | ||||| || || |||||||| || || ||| || Sbjct 1297608 AAAGTCAACCCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTTCCG 1297667 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || |||||||| ||||| ||| | | |||| |||| || || Sbjct 1297668 GAGAAGAATATTCCCTCCACGCAGGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGAG 1297727 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 ||| |||||| |||||||| | |||||||||| || ||| || | || || Sbjct 1297728 CCGTCA---ATCCAGCGGAGCGCCCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCG 1297784 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 || || |||||||| | || ||| | |||| | || | ||| || Sbjct 1297785 ATTGCGCGGAAGAGGTGGTTCTTCTCCGACGAGTCCTTGATGTAAGCCTCGAGGAGGAGA 1297844 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 ||||||||| ||||| | ||||| || ||||| ||||| ||||||||||| | |||| Sbjct 1297845 CTGTACATCTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGCC 1297904 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATC 48540 || | | ||| || || | ||| | ||| || |||||||| || || || || Sbjct 1297905 TCTGAGATCTGGACGTCCTTCATGAAAC-GTCCGGCGAGATTCTCCAAAACGATGCCGTC 1297963 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC 48600 || || || |||||||| ||||| ||||| | |||||| ||||| | || ||| | Sbjct 1297964 GGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAATGCTGCTCGCCGGAGGAGAGGGT 1298023 Query 48601 ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 |||| | | ||| | | || || ||||| || | ||||||||||| || | Sbjct 1298024 TACCCAGTGGCGGAGGTCGTCGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTG 1298083 Query 48661 TGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 ||||| |||||||| |||| || || ||||| Sbjct 1298084 GGCTTTCTTGTACATCTCCCAGATTTCAGGATA 1298116 >seq20 Length=956477 Score = 147 bits (162), Expect = 4e-30 Identities = 373/564 (66%), Gaps = 5/564 (1%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| ||| || || || | ||||| |||||||| || || | | |||| ||| Sbjct 870737 TAGAGCAGGCACGCGAAATCGCAGTGCAGACCTTCGTCACGCGATATCAACTCGTTCGAG 870796 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || | || ||||| | || | || || |||||||| || || ||| || Sbjct 870797 AAAGTCAACCCCGGCATCAGACCGCGCTTCTTCAGCCAGAATATGGCGCAGAAGCTTCCG 870856 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || ||||| ||||||||| | | || ||| ||||| | || Sbjct 870857 GAGAAGAATATCCCTTCCACGCAGGCGAACGCGATTATCCGCTCGGCGAAACACTCGCCG 870916 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 ||| ||||||| || ||||| | |||||| ||| | ||| || | ||||| Sbjct 870917 CCGTC---GATCCAGCGGAGTGCCCAATTGGCCTTCCTCTCCACGCAGGGGACGGTCTCG 870973 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 || || ||||||||| | || ||| | | ||| | |||| ||| || Sbjct 870974 ATTGCGCGGAAGAGCCTGTTCTTCTCGTCGGAATCCTTTATGTAGGATTCGAGGAGGAGG 871033 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 ||||||||| ||||| | || || || ||||||||||| ||||||||||| | ||| Sbjct 871034 CTGTACATCTCGGAGTGTATGTTTTCGATTGCGATCTGGAAACCGTAGAAGGCGCGGGCT 871093 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATC 48540 || | | |||||| || | ||| | ||| || || || || ||| || || || Sbjct 871094 TCCGAGATCTGCACCTCCTTCATGAAGC-GTCCGGCTAGGTTTTCCAGGACGATGCCGTC 871152 Query 48541 TGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC 48600 || || || |||||||| || || ||||| | |||||| ||||| | || || | Sbjct 871153 GGAGGCGGCGAAGAAGGCCAGAACGTGTTTGATGAAATGCTTCTCGTCGGTGGATAGGGT 871212 Query 48601 ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAG 48660 | |||| | | ||| | | || || ||||| || | ||||||||||| || Sbjct 871213 TTCCCAGTGGCGGAGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTC 871272 Query 48661 TGCTTTTTTGTACATGCCCCATAT 48684 || ||||||||||| |||| || Sbjct 871273 GGCCTTTTTGTACATCTCCCAAAT 871296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931507043118080