Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq20 163 5e-35 seq504 132 9e-26 >seq20 Length=956477 Score = 163 bits (180), Expect = 5e-35 Identities = 388/572 (68%), Gaps = 17/572 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||| ||||| || ||| |||||||||||| || | ||| || Sbjct 871296 ATTTGGGAGATGTACAAAAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGATTTG 871237 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 || ||||| | | |||| | | ||||||| |||||| ||||||| |||| || Sbjct 871236 TCCCAGGACCTCCGCCACTGGGAAACCCTATCCACCGACGAGAAGCATTTCATCAAACAC 871177 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || |||| ||||| || ||||| || || || || || || || || | ||| Sbjct 871176 GTTCTGGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTGGAAAACCTAGCCGGACGCTTC 871117 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | ||| |||||| | ||| ||| ||||||||||||||||| || |||||| Sbjct 871116 ATGAAGGAGGTGCAGATCTCGGAAGCCCGCGCCTTCTACGGTTTCCAGATCGCAATCGAA 871057 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GA--CGTACATTACAGACGTCGCC 25773 || | ||||| ||| |||| || || || | || | ||||| | || || | Sbjct 871056 AACATACACTCCGAGATGTA---CAGCCTCCTCCTCGAATCCTACATAAAGGATTCCGAC 871000 Query 25774 GAGAGAGATC-GGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 |||| ||| | |||| || | || |||||| | | ||| || | |||||||||| Sbjct 870999 GAGA-AGAACAGGCTCTTCCGCGCAATCGAGACCGTCCCCTGCGTGGAGAGGAAGGCCAA 870941 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||| | |||||| || || ||| || | ||||||| | | || || Sbjct 870940 TTGGGCACTCCGCTGGATCGACGGC---GGCGAGTGTTTCGCCGAGCGGATAATCGCGTT 870884 Query 25893 TG-CTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 | |||| ||||| || || || ||| ||| | | ||| ||||| |||||||| ||| Sbjct 870883 CGCCTGC-GTGGAAGGGATATTCTTCTCCGGAAGCTTCTGC-GCCATATTCTGGCTGAAG 870826 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGG 26009 || || ||||| ||| || ||||| || |||||| | || | ||||| || Sbjct 870825 AAGCGCGGTCTGATGCCGGGGTTG-ACTTTCTCGAACGAGTTGATATCGCGTGACGAAGG 870767 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||| ||| | ||||| || ||||||||||||| Sbjct 870766 TCTGCACTGCGATTTCGCGTGCCTGCTCTACA 870735 >seq504 Length=2204878 Score = 132 bits (146), Expect = 9e-26 Identities = 382/575 (66%), Gaps = 17/575 (3%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||||||||||||||||| || ||| ||| |||||||||||| || | ||| Sbjct 1298110 GAAATCTGGGAGATGTACAAGAAAGCCCAAGCCTCCTTCTGGACCGCCGAGGAAGTCGAT 1298051 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || || | ||| | | |||| | || ||| | |||||||||||| |||| Sbjct 1298050 TTGTCCGACGACCTCCGCCACTGGGTAACCCTCTCCTCCGGCGAGCAGCATTTCATCAAA 1297991 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || |||||||| || | Sbjct 1297990 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGT 1297931 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | ||| || ||| | |||||| |||||||| ||||| || |||||| Sbjct 1297930 TTCATGAAGGACGTCCAGATCTCAGAGGCCCGCGCCTTCTACGGCTTCCAAATCGCCATC 1297871 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTC 25770 || || | ||||| ||| |||| || || || | | | ||||| | ||| || Sbjct 1297870 GAGAACATCCACTCCGAGATGTA---CAGTCTCCTCCTCGAGGCTTACATCAAGGAC-TC 1297815 Query 25771 G-CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | | |||| | | || || | || ||||| | ||| || || ||| |||||| Sbjct 1297814 GTCGGAGAAGAACCACCTCTTCCGCGCAATCGAAACTGTCCCCTGCGTCCAGAAGAAGGC 1297755 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| | ||||| || || || | || | ||||| | || || Sbjct 1297754 CAATTGGGCGCTCCGCTGGATTGACGGC---TCCGAATCATTCGCAGAGCGAATTGTCGC 1297698 Query 25890 CTTTG-CTGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTC 25947 ||| | |||| |||||||| || || ||| ||| | | ||| |||||||||||||| Sbjct 1297697 CTTCGCCTGC-GTGGAGGGAATATTCTTCTCCGGAAGCTTCTGC-GCCATCTTCTGGCTG 1297640 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || |||| ||||| ||| || ||||| || |||||| | || | ||||| Sbjct 1297639 AAGAAGCGGGGGCTGATGCCGGGGTTG-ACTTTCTCGAACGAGTTAATTTCTCGCGACGA 1297581 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||| | ||| | ||||| || |||||||| |||| Sbjct 1297580 GGGTTTGCACTGCGATTTCGCGTGCCTGCTGTACA 1297546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928819117441280