Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2167 113 4e-20 seq310 84.2 2e-11 >seq2167 Length=1051226 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || ||||| ||||| || || || || || || ||| ||| |||| Sbjct 203986 ATGCAAATTTTCGTAAAGACATTGACTGGAAAGACAATCACTTTGGAAGTTGAAAGTTCA 203927 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| |||||| |||||||| || | || ||| || Sbjct 203926 GACACAATCGACAATGTCAAGGCGAAAATCCAGGACAAAGAAGGTATCCCTCCAGACCAG 203867 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||||| |||||||| || || || | |||||| || ||| | |||||||||||| Sbjct 203866 CAAAGACTGATCTTTGCCGGTAAGCAGCTCGAAGATGGTAGAACACTTGCCGATTATAAC 203807 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| || || ||||| || |||| | |||| ||||||| || Sbjct 203806 ATTCAAAAGGAGTCGACTCTTCATTTGGTGCTGCGATTGAGAGGAGGAAT 203757 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| || || || || || || ||| || ||| Sbjct 210945 ATGCAAATCTTTGTCAAGACATTGACCGGAAAGACAATCACTTTAGAAGTTGAGAGTTCG 210886 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| |||||| |||||||| ||| | || || || Sbjct 210885 GACACTATCGACAATGTTAAGGCGAAAATCCAAGACAAAGAAGGAATCCCACCCGACCAG 210826 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || || || |||||||| || || | |||||||||||| Sbjct 210825 CAGAGATTGATCTTTGCAGGTAAGCAGCTGGAAGATGGTAGGACGCTTGCCGATTATAAC 210766 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTA 28763 || ||||| || || ||||| || ||||| Sbjct 210765 ATCCAAAAGGAGTCGACTCTTCATTTGGTA 210736 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 28638 AAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAA 28697 |||||| |||||||| || | || ||| || || ||||| |||||||| || || Sbjct 204358 AAAATCCAAGACAAAGAAGGGATCCCTCCAGACCAGCAAAGACTGATCTTTGCCGGAAAG 204299 Query 28698 CAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| | |||||| || ||| |||| ||||| ||||||||||| ||||| ||||| || Sbjct 204298 CAACTTGAAGATGGTAGAACATTGGCGGATTACAACATTCAAAAGGAATCAACTCTCCA 204240 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||||||||| | || ||||| || || || ||| || ||| Sbjct 211629 ATGCAGATATTTGTAAAAACTCTTACTGGTAAGACGATCACTCTCGAGGTCGAGAGCTCA 211570 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || || | | | ||||| ||||| || || || ||| | || ||||| Sbjct 211569 GATACCGTAGACAACGTCAAGTCTAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCAG 211510 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || |||||||| || |||||| | ||||| ||| | || ||||| || Sbjct 211509 CAGAGGCTAATCTTTGCTGGGAAACAACTCGAAGACGGGCGAACCCTCGCGGATTACAAT 211450 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||||||||| || ||| | || |||| | || || ||||| Sbjct 211449 ATCCAGAAAGAATCTACACTCCACCTTGTCCTAAGGCTTCGTGGTGGGAT 211400 >seq310 Length=2395884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || || || || || |||| ||| Sbjct 1997432 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACTATCACTTTGGAGGTGGAAAGTTCT 1997491 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | || ||||| |||||| || ||||| || | || |||||| Sbjct 1997492 GATACGATTGACAATGTCAAGGCGAAAATCCAGGATAAAGAAGGGATCCCACCTGATCAA 1997551 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| ||||| || | |||||| | || | || |||||||| Sbjct 1997552 CAGAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGTCGTACACTTGCGGATTATAAT 1997611 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || || || ||||| || || ||| Sbjct 1997612 ATCCAGAAGGAATCCACCCTTCAC 1997635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425393331618348