Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq385 161 3e-35 seq1832 122 3e-23 >seq385 Length=2344269 Score = 161 bits (178), Expect = 3e-35 Identities = 229/322 (71%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 17955 TGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGC 18014 |||||||| || || ||||| || ||||||||||||||| ||| || | || || | | Sbjct 1147632 TGGTTGAAATTAAAACCATTTAGGTTAAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 1147573 Query 18015 CATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAG 18074 || || | || ||||||||||| | ||||||||||| | |||||| || Sbjct 1147572 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAATGTAACGAACGAGAATTGTTGAAA 1147513 Query 18075 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTC 18134 |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| || Sbjct 1147512 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTT 1147453 Query 18135 TCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTA 18194 ||||| ||||| |||||| | || || | || ||| ||| || || ||||| || Sbjct 1147452 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 1147393 Query 18195 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 18254 || | ||||| || | || ||||||||| ||||| | || |||||||| Sbjct 1147392 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 1147333 Query 18255 CCTGCAACACCGAGCATATGGA 18276 || || || || | ||||| || Sbjct 1147332 CCAGCTACGCCTAACATATAGA 1147311 >seq1832 Length=4053948 Score = 122 bits (134), Expect = 3e-23 Identities = 204/292 (70%), Gaps = 6/292 (2%) Strand=Plus/Plus Query 18420 GCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGT 18479 || ||||| || ||| |||||| | |||||| |||| | ||||||||||||| | Sbjct 934424 GCTGAATATGCCACAGCAATCCAATGTCGCATATCTAGACGG-AACTAAGTTCCCACTCA 934482 Query 18480 CGTCCCATGT---AAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGT 18536 || |||||| || | | || | | |||||| | ||||| |||| ||| || Sbjct 934483 CGAACCATGTAACAACAAGTTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGA 934542 Query 18537 CCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGA 18596 || || || |||||||| || || | || || |||||||| |||||||| |||| || Sbjct 934543 CCACCATTGTATAACCATTCATCAATGGATGTTGCTTCCCATATTGGGTAAGAGTGCAG- 934601 Query 18597 CCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAG 18656 |||| | ||| | || || || || ||||| || || |||||||| || |||| Sbjct 934602 -CGATACCTGCAGAAGTAGGAACAATAGCACCTGAGATAATATTGTTTCCGTAAAGTAGA 934660 Query 18657 GCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAA 18708 | ||| | | | |||||||||| ||| || || || ||||||||| ||| Sbjct 934661 GATCCAAAAATATTTTCACGAATACTATCAATATCTACCGGAGGAGCAACAA 934712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151314425243928