Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq370 109 7e-19 seq504 102 1e-16 seq20 96.9 4e-15 seq2203 91.5 2e-13 seq422 86.0 7e-12 >seq370 Length=494299 Score = 109 bits (120), Expect = 7e-19 Identities = 224/333 (67%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| ||||||||||| | || ||| || ||||| ||| | ||| || || Sbjct 303876 CCAGGTACCGGAAAGACCCTTTTGGCTAAAGCTATTGCGGGCGAAGCTGGTGTTCCGTTT 303817 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || | || | | | ||||| ||||||||||| || || ||||| |||||| Sbjct 303816 TTCTCGATTTCCGGTTCGGAGTTTGTTGAGATGTTTGTCGGAGTCGGTGCTTCGAGGGTT 303757 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| || | | || || ||| || |||||||| || | ||||| ||| Sbjct 303756 CGTGATCTTTTCAAGAAGGCAAAGGAGAATGCTCCTTGTATTGTGTTTGTGGATGAAATT 303697 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAA 175554 ||||| ||||| | ||| | | ||||| | | ||| ||||| || || || Sbjct 303696 GATGCTGTGGGGAGGCAGAGAGGGACTGGTATTGGTGGTGGAAACGACGAAAGGGAGCAG 303637 Query 175555 ACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTT 175614 || | || || || | || ||||||||||||||||| | || || ||| | || Sbjct 303636 ACGTTGAACCAGCTCTTAACTGAGATGGATGGCTTTGAAGGGAACACGGGTATTATTGTA 303577 Query 175615 ATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 ||||| || ||||| || | ||||| |||||| Sbjct 303576 ATTGCAGCTACTAACCGAGCCGATATTCTTGAT 303544 >seq504 Length=2204878 Score = 102 bits (112), Expect = 1e-16 Identities = 181/263 (69%), Gaps = 7/263 (3%) Strand=Plus/Minus Query 64957 TACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGT 65016 ||||| ||||| || || ||||| || | || || ||| ||||||| || || Sbjct 1297828 TACATCAAGGACTCGTCGGAGAAGAACCACCTCTTCCGCGCAATCGAAACTGTCCCCTGC 1297769 Query 65017 ATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCTTCG 65074 | |||||||||| || ||||| | ||| ||||| | ||| || |||| Sbjct 1297768 GTCCAGAAGAAGGCCAATTGGGCGCTCCGCTGGATTGAC-----GGCTCCGAATCATTCG 1297714 Query 65075 CCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG 65134 | ||||| || | || || || || |||||||| || ||||||||||| ||||||| Sbjct 1297713 CAGAGCGAATTGTCGCCTTCGCCTGCGTGGAGGGAATATTCTTCTCCGGAAGCTTCTGCG 1297654 Query 65135 CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTA 65194 | || | ||| ||||||||||||| || ||||| || | ||||| || || | | Sbjct 1297653 CCATCTTCTGGCTGAAGAAGCGGGGGCTGATGCCGGGGTTGACTTTCTCGAACGAGTTAA 1297594 Query 65195 TTTCCCGAGATGAGGGTCTCCAC 65217 |||| || || |||||| | ||| Sbjct 1297593 TTTCTCGCGACGAGGGTTTGCAC 1297571 >seq20 Length=956477 Score = 96.9 bits (106), Expect = 4e-15 Identities = 304/463 (66%), Gaps = 20/463 (4%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||||||||||| | | ||||| || || ||||| || || ||||||||||| ||| Sbjct 870906 TTCGCCGAGCGGATAATCGCGTTCGCCTGCGTGGAAGGGATATTCTTCTCCGGAAGCTTC 870847 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| || | ||| |||||||||| ||||| ||||| || | ||||| || || Sbjct 870846 TGCGCCATATTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGTTGACTTTCTCGAACGAG 870787 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG 65250 | || || || || || ||||| ||| || ||| |||| || || | | |||| Sbjct 870786 TTGATATCGCGTGACGAAGGTCTGCACTGCGA-TTTCGCGTG--CCTGCTCTACAGTTTG 870730 Query 65251 CGTAATA-------GACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGA 65303 | || | || | | | |||| | | | || ||| || |||||||| Sbjct 870729 CTGAAGATGAAGCTGAGCGAGGA--GAAA--GTGAAGGGGATAGTGGCGGACGCGGTTGA 870674 Query 65304 GATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGA 65363 ||||||| | ||| | | ||||| || || || | | || ||||| || Sbjct 870673 AATTGAGAGGGAGTTTGTGTGCGACGCGCTGCCGTGCGCGTTGGTTGGGATGAA--TGGA 870616 Query 65364 GAA--GATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTG 65421 ||| |||| ||||||||||||| ||| ||||| | | || || || || |||| Sbjct 870615 GAACTGATGAGTCAGTACATTGAGTACGTGGCGGATAGATTGCTGAATGAA-TTAGGGTA 870557 Query 65422 C-CACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGG 65480 | | || | || | |||| || ||||| | ||||| || || || | || Sbjct 870556 CGGAAAGATGTACAATGTTCAGAACCCGTTTGATTGGATGGAGTTGATAAGTCTGCAGGG 870497 Query 65481 GAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTATGGGAAA 65523 |||||| || |||||||||||| ||||||| || ||| |||| Sbjct 870496 GAAGACTAATTTCTTTGAGAAGAGAGTTGGTGAGTATCAGAAA 870454 >seq2203 Length=1028949 Score = 91.5 bits (100), Expect = 2e-13 Identities = 216/320 (68%), Gaps = 10/320 (3%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || || |||||||| |||| ||| || | ||| || ||||| ||||| |||||| Sbjct 669023 GGCGCGAAGATCCCGAAAGGCTGCCTCCTGGTGGGCCCACCTGGTACAGGAAAAACCCTC 668964 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAA 175393 || || | || | | || ||| | ||| || ||| | || |||| | || || Sbjct 668963 CTGGCGAGGGCGGTTTCCGGCGAAGCTGGTGTACCGTTCTTTTCCTGTGCGGCGTCGGAA 668904 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCG 175453 ||||||||| | ||||| ||||| || || || || | ||||| || || | | Sbjct 668903 --TTTGTGGAGCTTTTTGTAGGTGTTGGAGCTTCGAGAGTGAGGGATCTGTTCGAGAAGG 668846 Query 175454 CCC--GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA 175511 | |||||| || || ||||| || ||||||||||||||||| ||||| | ||| Sbjct 668845 CAAAGGCGAAAGCT--CCTTGCATTGTGTTTATTGATGAGATTGATGCTGTGGGGAGGCA 668788 Query 175512 ACGCAGCGCTGGTGGTATGC-CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTAC 175570 | | || || | | || || ||||| |||||||| || || |||||||| || Sbjct 668787 GAGAGGGGCCGG-GATGGGCGGAGGGAATGATGAGAGAGAGCAGACGATTAATCAGCTCT 668729 Query 175571 TCACCGAGATGGATGGCTTT 175590 | || || ||||| || ||| Sbjct 668728 TGACTGAAATGGACGGGTTT 668709 >seq422 Length=4557820 Score = 86.0 bits (94), Expect = 7e-12 Identities = 208/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| ||||| || || |||||| | ||| ||| || || || ||||| || Sbjct 4441487 GGTGCGAAGATTCCGAAGGGATGCCTTCTGGTGGGCCCGCCGGGAACCGGGAAGACGCTG 4441546 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 | ||| | || | || ||||| | || || || || |||||| || | | Sbjct 4441547 TTGGCCAGGGCGGTGGCTGGTGAGGCTGGGGTGCCGTTTTTCTCGTGCTCCGCTTCGGAA 4441606 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||| | ||||||||||| ||||| ||||| | ||| | || || | ||| Sbjct 4441607 TTTGTTGAGCTTTTTGTTGGTGTAGGTGCTTCTAGGGTGAGGGATTTGTTCGAGAAGGCC 4441666 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || ||||| |||||||||||||||||||| ||||| | ||| | Sbjct 4441667 AAGGCGAAGGCGCCTTGCATTGTGTTCATTGATGAGATTGATGCTGTGGGGAGGCAGAGG 4441726 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | || ||| | | ||||| || |||| || || |||||||| || | || Sbjct 4441727 GGGGCGGGTATGGGGGGTGGGAATGATGAACGAGAGCAGACGATTAATCAGCTCTTGACT 4441786 Query 175576 GAGATGGATGGCTTT 175590 || |||||||| ||| Sbjct 4441787 GAAATGGATGGGTTT 4441801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596553104850560