Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq385 192 7e-44 seq1832 86.0 8e-12 >seq385 Length=2344269 Score = 192 bits (212), Expect = 7e-44 Identities = 238/323 (74%), Gaps = 2/323 (1%) Strand=Plus/Minus Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || ||||| || || |||||||| ||||| |||| ||||| | || ||| ||| Sbjct 1147632 TGGTTGAAATTAAAACCATTTAGGTTAAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 1147573 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | || || || || | | ||| |||||||| || | | | ||||| ||| Sbjct 1147572 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAATGTAACGAACGAGAATTGTTGAAA 1147513 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| ||||| || |||||||| || ||||||||||| || Sbjct 1147512 CTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGT 1147454 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 ||||| ||||||||||| | ||||| | || ||| || | ||| || || || || Sbjct 1147453 TTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 1147394 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 1147393 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATAC 1147334 Query 8310 ACCTGCTACCCCTGCCATATGGA 8332 ||| ||||| ||| ||||| || Sbjct 1147333 ACCAGCTACGCCTAACATATAGA 1147311 >seq1832 Length=4053948 Score = 86.0 bits (94), Expect = 8e-12 Identities = 196/292 (67%), Gaps = 6/292 (2%) Strand=Plus/Plus Query 8481 ATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACC 8540 |||||| ||| ||||| ||| |||| ||| ||| | | | ||||||| | | | Sbjct 934429 ATATGCCACAGCAATCCAATGTCGCATATCTAGACGGAACTA-AGTTCCCACTCACGAAC 934487 Query 8541 CATGTAAGCAGAAATTCCAATAAGGAA---GTGGAAGATAACCAACTGATATGGACCTCC 8597 ||||||| | || || || ||| || ||| | | || | | ||| ||||| || Sbjct 934488 CATGTAACAACAAGTTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACC 934547 Query 8598 GTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAAT 8657 || || ||||| ||||| | | | |||||||| || || || |||| | | || Sbjct 934548 ATTGTATAACCATTCATCAATGGATGTTGCTTCCCATATTGGGTAAGAGTGCAG--CGAT 934605 Query 8658 AGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACC 8717 | | |||| ||||| | |||||| ||||| || |||||||| || | | || || Sbjct 934606 ACCTGCAGAAGTAGGAACAATAGCACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCC 934665 Query 8718 TGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAAT 8769 || | ||||||||||| || ||||| || || |||||| |||| ||| Sbjct 934666 AAAAATATTTTCACGAATACTATCAATATCTACCGGAGGAGCAACAATGAAT 934717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615845371404640