Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq385 143 8e-30 seq1832 95.1 3e-15 >seq385 Length=2344269 Score = 143 bits (158), Expect = 8e-30 Identities = 225/322 (70%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 40653 TGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGC 40712 ||||| || ||||||||||| ||||||||||||||||| ||||| | | || | | Sbjct 1147632 TGGTTGAAATTAAAACCATTTAGGTTAAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 1147573 Query 40713 CATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAAT 40772 || || || | || || ||||| | || ||||| |||| || ||| ||||||||| Sbjct 1147572 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAATGTAACGAACGAGAATTGTTGAAA 1147513 Query 40773 GAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTC 40832 ||||||||| || || | || ||||| ||||| || || ||||| || |||||||| Sbjct 1147512 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACAATATTATAAGTT 1147453 Query 40833 TCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGA 40892 || | || |||||||| | || || | || |||||| |||| ||||| |||| Sbjct 1147452 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 1147393 Query 40893 ATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACG 40952 || | ||||| || | | || ||||||||| || | | || || || || Sbjct 1147392 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 1147333 Query 40953 CCTGCAACGCCGAGCATATGGA 40974 || || ||||| | ||||| || Sbjct 1147332 CCAGCTACGCCTAACATATAGA 1147311 >seq1832 Length=4053948 Score = 95.1 bits (104), Expect = 3e-15 Identities = 196/289 (68%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 41116 GAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACT 41175 |||||| ||||||||| ||||| ||| |||| |||| | | | || ||||||||| Sbjct 934422 GAGCTGAATATGCCACAGCAATCCAATGTCGCATATCTAGACGGAACTAA-GTTCCCACT 934480 Query 41176 GTCTACCAGCGTATGCT---GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATG 41232 | | | ||| | ||| || | ||||||||| | ||||| |||| ||| | Sbjct 934481 CACGAACCATGTAACAACAAGTTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAG 934540 Query 41233 GTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTA 41292 | || || ||||||| ||| || || | | |||||||| |||||||| | || | Sbjct 934541 GACCACCATTGTATAACCATTCATCAATGGATGTTGCTTCCCATATTGGGTAAGAGTGCA 934600 Query 41293 GTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTA 41352 | |||| | ||| | ||||| | ||| || || ||||||||||| ||||| | || Sbjct 934601 G--CGATACCTGCAGAAGTAGGAACAATAGCACCTGAGATAATATTGTTTCCGTAAAGTA 934658 Query 41353 ACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGC 41401 || || ||| ||||| || | ||| |||||||| || || || Sbjct 934659 GAGATCCAAAAATATTTTCACGAATACTATCAATATCTACCGGAGGAGC 934707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143698625297208