Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2167 123 4e-23 seq310 109 1e-18 seq149 93.3 8e-14 seq2135 86.0 1e-11 >seq2167 Length=1051226 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || ||||| || ||||||| ||| | || | ||| || || ||| Sbjct 210710 ATTTGCATTCCTCCCCTCAACCGCAGTACCAAATGAAGAGTCGACTCCTTTTGGATGTTA 210769 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| | ||| ||| ||| || | || || || ||||| || |||||||| || Sbjct 210770 TAATCGGCAAGCGTCCTACCATCTTCCAGCTGCTTACCTGCAAAGATCAATCTCTGCTGG 210829 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||| ||||| ||||| | || | ||| ||||| || ||| Sbjct 210830 TCGGGTGGGATTCCTTCTTTGTCTTGGATTTTCGCCTTAACATTGTCGATAGTGTCCGAA 210889 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| ||| || || || || || | || || ||||| |||||||| Sbjct 210890 CTCTCAACTTCTAAAGTGATTGTCTTTCCGGTCAATGTCTTGACAAAGATTTGCAT 210945 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||||||||| || |||| ||| | || | ||| || ||| ||| Sbjct 203751 ATTTGCATTCCTCCTCTCAATCGCAGCACCAAATGAAGAGTCGACTCCTTTTGAATGTTA 203810 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || |||| | |||||| ||| || | || || |||||||| || | ||| || || Sbjct 203811 TAATCGGCAAGTGTTCTACCATCTTCGAGCTGCTTACCGGCAAAGATCAGTCTTTGCTGG 203870 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||| || || ||||| | || | ||| || || || ||| Sbjct 203871 TCTGGAGGGATACCTTCTTTGTCCTGGATTTTCGCCTTGACATTGTCGATTGTGTCTGAA 203930 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| | ||| || || || || || | || ||||| || |||||||| Sbjct 203931 CTTTCAACTTCCAAAGTGATTGTCTTTCCAGTCAATGTCTTTACGAAAATTTGCAT 203986 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || ||||| |||| ||||| ||||| ||||| |||||||| ||| Sbjct 211475 TCTTCGAGTTGTTTCCCAGCAAAGATTAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTA 211534 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | || | || | ||||| || ||| || || ||||| || Sbjct 211535 TCTTGAATTTTAGACTTGACGTTGTCTACGGTATCTGAGCTCTCGACCTCGAGAGTGATC 211594 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || |||||||||||||| ||||| Sbjct 211595 GTCTTACCAGTAAGAGTTTTTACAAATATCTGCAT 211629 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| ||||| || | || ||||| | || | || || ||| || Sbjct 204207 ATTTGCATGCCACCCCTCAACCGCAACACAAGATGGAGAGTTGATTCCTTTTGAATGTTG 204266 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || |||||| ||| || | ||| ||||||||||| || | ||| || || Sbjct 204267 TAATCCGCCAATGTTCTACCATCTTCAAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGG 204326 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||| ||||| ||||||| ||| | || || || || ||| Sbjct 204327 TCTGGAGGGATCCCTTCTTTGTCTTGGATTTTGGCTTTAACGTTGTCGATTGTGTCTGAA 204386 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || | ||| || || || || || | || || ||||| || |||||| Sbjct 204387 CTTTCGACCTCCAAAGTGATTGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCATT 204443 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | | || || || ||||| | || | ||||| ||||| || || Sbjct 204441 ATTCCACCACGAAGTCTTAGGACAAGATGGAGAGTCGATTCTTTCTGGATATTGTAATCA 204500 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| | ||| || | ||| ||||| || || || ||||| || || || ||| Sbjct 204501 GCGAGGGTTCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGA 204560 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||||| ||| | || || || || ||| ||| Sbjct 204561 GGGATCCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATTGTGTCTGAACTTTCA 204620 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || ||||| || || || ||||||||||| || ||||| Sbjct 204621 ACCTCCAAAGTGATTGTTTTGCCGGTAAGAGTTTTTACAAAAATCTGCAT 204670 >seq310 Length=2395884 Score = 109 bits (120), Expect = 1e-18 Identities = 170/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || || || || | |||| ||| || || || Sbjct 1996300 AATTTGCATGCCACCACGAAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTTTGGATGTT 1996241 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | | ||||| ||| || | |||||| || || || |||| || || || Sbjct 1996240 GTAATCTGCAAGGGTTCTGCCATCTTCGAGTTGTTTGCCAGCGAAGATTAGCCTTTGCTG 1996181 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||| || || ||||| || ||||| ||||| | || | ||| || |||||||| Sbjct 1996180 GTCAGGGGGAATCCCTTCCTTGTCTTGGATTTTAGCCTTGACATTGTCGATTGTATCGGA 1996121 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | ||| || || |||||||||||||| || ||||| || || |||||||| ||||| | Sbjct 1996120 ACTCTCGACCTCGAGAGTTATAGTTTTTCCGGTTAGAGTCTTGACAAATATCTGCATCTG 1996061 Query 193364 ATT 193366 ||| Sbjct 1996060 ATT 1996058 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 |||||||| || | | || | | ||| |||| || || || ||||| || | ||| Sbjct 1997613 ATATTATAATCCGCAAGTGTACGACCATCTTCTAGCTGCTTGCCTGCAAAGATAAGCCTC 1997554 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||||||||| || || ||||||||||| || ||||| | || | ||| ||| ||| Sbjct 1997553 TGTTGATCAGGTGGGATCCCTTCTTTATCCTGGATTTTCGCCTTGACATTGTCAATCGTA 1997494 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || ||| || || || | ||| ||||| || || || | || || ||||| |||||| Sbjct 1997493 TCAGAACTTTCCACCTCCAAAGTGATAGTCTTCCCAGTCAAAGTCTTGACAAAGATTTGC 1997434 Query 193359 AT 193360 || Sbjct 1997433 AT 1997432 >seq149 Length=2637241 Score = 93.3 bits (102), Expect = 8e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 ||| || ||||||| ||| || | || || | ||||||||||| || || | | Sbjct 721943 AATGTTGTAGTCGGCTAAGGTCCGGCCGTCCTCCAGCTGTTTTCCGGCGAAGATGAGGCG 721884 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||| || || || ||||| || || || || || | || | ||| || || Sbjct 721883 CTGCTGATCCGGCGGGATACCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCGATGGT 721824 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||||| ||| ||||| ||||| || ||||| || ||||| ||||| || || ||||| Sbjct 721823 GTCGGAGCTCTCCACTTCGAGAGTGATTGTTTTTCCGGTTAGGGTTTTCACGAAGATTTG 721764 Query 193358 CATTTTATT 193366 |||||| || Sbjct 721763 CATTTTCTT 721755 >seq2135 Length=1067647 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | || || |||| || | |||| ||| || ||| || || || Sbjct 902050 ATACCACCTCTGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCA 901991 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | || || | |||||| || ||||| || || ||||| || || || Sbjct 901990 GCAAGAGTGCGCCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCCGGG 901931 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || |||| ||| | || ||| || || ||| ||| Sbjct 901930 GGAATGCCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCAATCGTGTCAGAACTCTCG 901871 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || ||||| || || || || || || |||||||| ||||| Sbjct 901870 ACTTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTGACAAATATCTGCAT 901821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899629524555840