Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2167 147 3e-30 seq310 141 1e-28 >seq2167 Length=1051226 Score = 147 bits (162), Expect = 3e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || |||||||||||||| || || || || ||||| ||| ||| Sbjct 203986 ATGCAAATTTTCGTAAAGACATTGACTGGAAAGACAATCACTTTGGAAGTTGAAAGTTCA 203927 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || ||||| || || |||||||| || |||||||| || Sbjct 203926 GACACAATCGACAATGTCAAGGCGAAAATCCAGGACAAAGAAGGTATCCCTCCAGACCAG 203867 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| |||| | |||||||||||||||||||||| ||||| | | |||||||| Sbjct 203866 CAAAGACTGATCTTTGCCGGTAAGCAGCTCGAAGATGGTAGAACACTTGCCGATTATAAC 203807 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| ||| |||| |||||||| ||| | |||| ||||| || Sbjct 203806 AT-TCAAAAGGAGTCGACTCTTCATTTGGTGCTGCGATTGAGAGGAGG 203760 Score = 140 bits (154), Expect = 5e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || |||||||||||||| || ||||| || ||||||||| ||| Sbjct 204214 ATGCAAATCTTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTCGAAAGTTCA 204155 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||| ||||| ||||||||||| ||||| || || Sbjct 204154 GACACAATCGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCAG 204095 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | ||| |||||||||||||||||| |||||| | | ||||| ||| Sbjct 204094 CAAAGACTAATCTTTGCAGGTAAGCAGCTCGAAGATGGCAGAACGCTGGCTGATTACAAT 204035 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 || ||||| |||| || || | ||| |||| Sbjct 204034 ATTCAGAAAGAATCGACTCTCCACCTTGTGCTAAG 204000 Score = 127 bits (140), Expect = 3e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| || ||||||||||| || || || || || |||||| ||| Sbjct 204443 AATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACAATCACTTTGGAGGTCGAAAGTTC 204384 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||||| ||| ||||| ||||| |||||||| || |||||||| || Sbjct 204383 AGACACAATCGACAACGTTAAAGCCAAAATCCAAGACAAAGAAGGGATCCCTCCAGACCA 204324 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| |||| | |||||| ||||| || |||||| ||||| || | ||||| || Sbjct 204323 GCAAAGACTGATCTTTGCCGGAAAGCAACTTGAAGATGGTAGAACATTGGCGGATTACAA 204264 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| || | || || ||| | ||||| Sbjct 204263 CAT-TCAAAAGGAATCAACTCTCCATCTTGTGTT 204231 Score = 123 bits (136), Expect = 4e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || |||||||| ||||| || || || |||||||| || ||| Sbjct 210945 ATGCAAATCTTTGTCAAGACATTGACCGGAAAGACAATCACTTTAGAAGTTGAGAGTTCG 210886 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| ||||| |||||||| || || || || || Sbjct 210885 GACACTATCGACAATGTTAAGGCGAAAATCCAAGACAAAGAAGGAATCCCACCCGACCAG 210826 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| ||||||||||| |||||| || || | | ||||||| Sbjct 210825 CAGAGATTGATCTTTGCAGGTAAGCAGCTGGAAGATGGTAGGACGCTTGCCGATTATA-- 210768 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| |||| |||||||| || Sbjct 210767 ACATCCAAAAGGAGTCGACTCTTCATTTGGT 210737 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || |||||||||||||| || ||||| || ||||| ||| ||| Sbjct 211401 ATGCAGATATTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTTGAAAGTTCA 211342 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||| || || |||||||| || ||||| || || Sbjct 211341 GACACTATCGATAATGTTAAAGCGAAAATTCAGGACAAAGAAGGGATTCCTCCGGATCAG 211282 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| || || || ||||||||| |||| | | ||||| ||| Sbjct 211281 CAAAGATTGATCTTTGCTGGGAAACAACTCGAAGATGGGCGAACCCTCGCGGATTACAAT 211222 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 211221 ATCCAGAAAGAGTCTACACTACA 211199 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || || ||||| || || || || || ||| ||| Sbjct 204670 ATGCAGATTTTTGTAAAAACTCTTACCGGCAAAACAATCACTTTGGAGGTTGAAAGTTCA 204611 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| ||| ||||| ||||| || ||||| || |||||||| || Sbjct 204610 GACACAATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGGATCCCTCCAGACCAG 204551 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || || ||||| || |||||| |||| | | ||||| ||| Sbjct 204550 CAAAGATTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGAACCCTCGCTGATTACAAT 204491 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGA 156038 || ||||| |||| || ||| | || ||||| Sbjct 204490 ATCCAGAAAGAATCGACTCTCCATCTTGTCCTAAGA 204455 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||| || ||||| || || || || || || ||| Sbjct 210718 AATGCAAATCTTCGTAAAGACTTTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGTTC 210659 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || |||||| || || |||||||| ||||| || || || || || Sbjct 210658 GGATACAATCGACAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATTCCACCGGACCA 210599 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||| | || | ||| || |||||||||||||| Sbjct 210598 GCAAAGGCTCATCTTTGCTGGGAAGCAGCTCGAAGA 210563 >seq310 Length=2395884 Score = 141 bits (156), Expect = 1e-28 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| |||||||| |||||| | || || ||| ||| Sbjct 1997204 ATGCAGATTTTTGTCAAGACTTTGACCGGAAAAACCATTACACTGGAGGTTGAAAGTTCA 1997263 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| ||||| ||||| || ||||| || |||||||| || Sbjct 1997264 GACACGATCGACAATGTGAAGGCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 1997323 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| |||||||||||||||||| || || | ||||||||| Sbjct 1997324 CAACGTTTGATCTTTGCAGGTAAGCAGCTCGAAGATGGGAGGACACTTGCAGATTATA-- 1997381 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||||||| ||| ||||||||||| | || || | || |||||||| Sbjct 1997382 ATATCCAAAAGGAGTCGACGCTTCATCTGGTTTTGCGGTTGAGAGGCGG 1997430 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || ||||| || || || || ||| |||| Sbjct 1997432 ATGCAAATCTTTGTCAAGACTTTGACTGGGAAGACTATCACTTTGGAGGTGGAAAGTTCT 1997491 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||||| || ||||||||||| || || || || ||| Sbjct 1997492 GATACGATTGACAATGTCAAGGCGAAAATCCAGGATAAAGAAGGGATCCCACCTGATCAA 1997551 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || |||||||| |||||| | || | | ||||||||| Sbjct 1997552 CAGAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGTCGTACACTTGCGGATTATAAT 1997611 Query 156003 AT 156004 || Sbjct 1997612 AT 1997613 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 ||| | ||||| |||||| | || || | || ||||||||||| || | || ||||| Sbjct 1996058 AATCAGATGCAGATATTTGTCAAGACTCTAACCGGAAAAACTATAACTCTCGAGGTCGAG 1996117 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| |||| || || || || |||||| ||||| || ||||| || || || Sbjct 1996118 AGTTCCGATACAATCGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGGATTCCCCCT 1996177 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || || ||||| | || | || || || || ||||||||| |||||| | ||||| Sbjct 1996178 GACCAGCAAAGGCTAATCTTCGCTGGCAAACAACTCGAAGATGGCAGAACCCTTGCAGAT 1996237 Query 155997 TATAATATATCCAAA 156011 || | | ||||||| Sbjct 1996238 TACA--ACATCCAAA 1996250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731851763739200