Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2167 127 4e-24 seq310 113 8e-20 seq2135 86.0 1e-11 seq10 84.2 4e-11 >seq2167 Length=1051226 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | || || | |||| |||| |||||| ||||| ||||| Sbjct 211172 ATCCCACCACGAAGCCTTAGGACAAGGTGTAGTGTAGACTCTTTCTGGATATTGTAATCC 211231 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | |||||| |||||||| || ||||| || || || || Sbjct 211232 GCGAGGGTTCGCCCATCTTCGAGTTGTTTCCCAGCAAAGATCAATCTTTGCTGATCCGGA 211291 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || ||||| ||| |||||| ||||| ||||| ||| Sbjct 211292 GGAATCCCTTCTTTGTCCTGAATTTTCGCTTTAACATTATCGATAGTGTCTGAACTTTCA 211351 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||| || || ||||| ||||| || | |||||||||||| Sbjct 211352 ACTTCCAAAGTAATCGTCTTTCCAGTCAATGTCTTGACGAATATCTGCAT 211401 Score = 111 bits (122), Expect = 3e-19 Identities = 172/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | || || | || | |||| ||||| ||||| ||||| Sbjct 211400 ATCCCACCACGAAGCCTTAGGACAAGGTGGAGTGTAGATTCTTTCTGGATATTGTAATCC 211459 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| |||| || | |||||| |||||||| |||| ||||| || || || Sbjct 211460 GCGAGGGTTCGCCCGTCTTCGAGTTGTTTCCCAGCAAAGATTAGCCTCTGCTGATCCGGA 211519 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| |||||| || || || || |||||||| || Sbjct 211520 GGAATTCCTTCCTTATCTTGAATTTTAGACTTGACGTTGTCTACGGTATCTGAGCTCTCG 211579 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT--TATTAT 172077 || || ||||| || || |||||||| | ||||| | ||||||||||| | |||| Sbjct 211580 ACCTCGAGAGTGATCGTCTTACCAGTAAGAGTTTTTACAAATATCTGCATCTGATATTCG 211639 Query 172078 AAAAA 172082 ||||| Sbjct 211640 AAAAA 211644 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| | || || | || | |||| ||||| ||||| |||||| Sbjct 204897 ATCCCACCACGAAGCCTTAGGACAAGGTGGAGTGTAGATTCTTTTTGGATATTGTAATCT 204956 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||||||||||||||| ||||| ||||| ||||| || Sbjct 204957 GCGAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCAAAGATTAACCTCTGCTGGTCCGGG 205016 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| |||||| ||| || || || |||||||| || Sbjct 205017 GGAATTCCTTCCTTATCTTGAATTTTAGCTTTGACGTTGTCGATCGTATCTGAACTCTCG 205076 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || || || | || || | || |||||||| Sbjct 205077 ACCTCGAGAGTGATCGTCTTGCCGGTAAGAGTCTTTACAAAGATCTGCAT 205126 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || ||||| ||||| || |||||||| ||||| ||||| ||||||||||| Sbjct 210791 TCTTCCAGCTGCTTACCTGCAAAGATCAATCTCTGCTGGTCGGGTGGGATTCCTTCTTTG 210850 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| ||||| || ||||| ||||| || || || ||||||| ||| || Sbjct 210851 TCTTGGATTTTCGCCTTAACATTGTCGATAGTGTCCGAACTCTCAACTTCTAAAGTGATT 210910 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || | || || ||||| Sbjct 210911 GTCTTTCCGGTCAATGTCTTGACAAAGATTTGCAT 210945 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||| | | | ||| |||| || | ||||| |||||||| || | || Sbjct 203577 ATATTATAATCGGCAAGCGTGCGTCCGTCTTCGAGCTGTTTCCCAGCAAAGATGAGCCTT 203636 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || ||||| |||||||| || || ||| ||||| || ||| Sbjct 203637 TGCTGGTCCGGTGGAATCCCTTCCTTATCTTGAATCTTTGCTTTCACATTGTCGATTGTA 203696 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || | ||| || ||||| || || || || || | ||| || ||| Sbjct 203697 TCGGAACTCTCCACCTCCAAAGTGATCGTTTTGCCCGTCAAAGTCTTGACGAAGATTTGC 203756 Query 172068 ATT 172070 ||| Sbjct 203757 ATT 203759 >seq310 Length=2395884 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||||| | | || | || || | ||| |||||||||||||| |||||| Sbjct 1996473 ATATTGTAATCTGCAAGGGTTCTGCCATCTTCAAGTTGCTTACCAGCAAAAATCAATCTC 1996414 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || |||||||| || || ||||| |||||||| || || |||||||| || || Sbjct 1996413 TGCTGGTCAGGGGGGATGCCTTCCTTATCTTGGATCTTTGCCTTTACATTGTCGATTGTG 1996354 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| || || || ||||| ||||||||||| || | ||||| | ||| || ||| Sbjct 1996353 TCTGAGCTCTCAACCTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTGACGAAAATTTGC 1996294 Query 172068 AT 172069 || Sbjct 1996293 AT 1996292 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||||| || | | | || || | |||||| || ||||| || |||||| Sbjct 1996929 ATATTGTAATCTGCCAAGGTCCTCCCATCTTCGAGTTGTTTGCCTGCAAATATCAATCTC 1996870 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| || || ||||| || || ||||| ||||| || || ||| || || Sbjct 1996869 TGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGAATTTTCGCCTTGACGTTATCAATGGTG 1996810 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| ||| || || | ||||||||||| || || || || || | ||| |||||| Sbjct 1996809 TCTGAACTTTCAACCTCCAATGTAATGGTTTTTCCGGTCAAAGTCTTGACGAAAATCTGC 1996750 Query 172068 AT 172069 || Sbjct 1996749 AT 1996748 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||||| || | | | || || | |||||| || || || || |||||| Sbjct 1997157 ATATTGTAATCTGCCAAGGTCCTCCCATCTTCGAGTTGTTTGCCTGCGAAGATCAATCTC 1997098 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| || || ||||| || || ||||| ||||| || || ||| || || Sbjct 1997097 TGCTGGTCTGGAGGAATTCCCTCCTTGTCTTGAATTTTTGCCTTCACGTTATCGATGGTG 1997038 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| ||| || || | ||||||||||| || || || || || | ||| |||||| Sbjct 1997037 TCTGAGCTTTCAACCTCCAATGTAATGGTTTTTCCGGTCAAAGTCTTGACGAAAATCTGC 1996978 Query 172068 AT 172069 || Sbjct 1996977 AT 1996976 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | |||||| ||||| || |||| || || |||||||| || || ||||| || Sbjct 1996218 TCTTCGAGTTGTTTGCCAGCGAAGATTAGCCTTTGCTGGTCAGGGGGAATCCCTTCCTTG 1996159 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| || ||||| || ||||| || || || || ||||| || Sbjct 1996158 TCTTGGATTTTAGCCTTGACATTGTCGATTGTATCGGAACTCTCGACCTCGAGAGTTATA 1996099 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 ||||| || |||| || || | ||||||||||| | ||| Sbjct 1996098 GTTTTTCCGGTTAGAGTCTTGACAAATATCTGCATCTGATT 1996058 >seq2135 Length=1067647 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || | |||| ||| || ||| || ||||| Sbjct 902050 ATACCACCTCTGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCA 901991 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || |||| || | |||||| |||||||| || || ||||| ||||| || Sbjct 901990 GCAAGAGTGCGCCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCCGGG 901931 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || ||| || || || || || || || Sbjct 901930 GGAATGCCCTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCAATCGTGTCAGAACTCTCG 901871 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || || || ||||| | || || | ||||||||||| Sbjct 901870 ACTTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTGACAAATATCTGCAT 901821 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||||| |||||||| || || ||||| ||||| ||||| || || || ||| Sbjct 903115 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGAATCCCCTCCTTA 903056 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || ||| ||| || || || || || || || || || | ||| ||| Sbjct 903055 TCCTGAATCTTAGCTTTGACGTTGTCAATGGTGTCCGAACTCTCCACCTCCAAAGTGATG 902996 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || || | ||||||||||| Sbjct 902995 GTCTTACCAGTCAAAGTCTTCACAAATATCTGCAT 902961 >seq10 Length=940881 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 |||| ||| || ||||| || || | ||| ||||||||||| |||| || || | Sbjct 668842 TATAATAAGCAAGCAAAGTCACAGTGGAGACCCTCGTCCCTAGAAATAAGCTCGTTCGAA 668783 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATAT 39220 || || ||||| ||||||||||| ||||||||||||||||| || Sbjct 668782 AATGTCAATCCCGGCATTAATCCCCTCTTTTTAAGCCAAAAAAT 668739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905110972989600