Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq127 131 5e-25 seq149 113 1e-19 seq1991 105 2e-17 seq848 100 8e-16 seq310 89.7 2e-12 seq1336 86.0 2e-11 >seq127 Length=812523 Score = 131 bits (144), Expect = 5e-25 Identities = 233/340 (69%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| || || ||| |||||| || ||| || || |||||| ||| | || || | Sbjct 567238 ATTCCTAACAGTCCCATCATACTTAACCATGATATCCTCCATAGCCTTCACCAACCGCCT 567297 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||||| ||||| ||| ||||| ||||| |||||||| ||||| | | ||| || Sbjct 567298 TTGAATATATCCAGTCTCAGAAGTTTTCACAGCAGTATCAATAAGACCCTCCCTACCTCC 567357 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| ||||||||||| | ||| | ||| | |||| || | | ||| |||| || || Sbjct 567358 CATGGCATGGAAGAAGAACTCCTGCGGAGTCAATCCCCGAAGATACGAGTTCTCCACAAA 567417 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| ||| || || || ||||| |||||||| | || | | | | Sbjct 567418 CCCACGACTCTCTGGACCATAATCATCTTTGGTGAAGTGTGGTAATGTACGATCGACGAA 567477 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 || | || || || || || ||||| || ||||| |||| || | | ||||||| || Sbjct 567478 TCCAAAAGGTATTCGTTTGCCTTCAACATTTTGCTGCCCCACACATGCAGTCATCTGAGA 567537 Query 302838 AATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 || || | | ||| ||||| || |||||| | |||||| Sbjct 567538 TATGTTAATAAAACTTCCCTTTGATCCAGCAGTAACCATA 567577 >seq149 Length=2637241 Score = 113 bits (124), Expect = 1e-19 Identities = 214/310 (69%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 ||||| ||||| |||||||| || | || ||| | | ||||| || | |||||| Sbjct 1201275 GCATCTATTTCATCAATGAATATTATACTCGGTGCACACTGTCTAGCCTCTTGAAATAAA 1201334 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 | || | ||||| ||||| |||||| ||||||| | || || ||| |||||| | Sbjct 1201335 CTCCGAACCCTGGATGGTCCAACTCCAACAAACATTTCCATGAAATCTGAACCGGATA-T 1201393 Query 289156 TGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 ||| ||| | ||| | ||| ||||| ||| | || ||||||||||| ||||| Sbjct 1201394 GGAAAGAAAAGGCACACCAGATTCTCCTGCAGTTGCTTTGGCGAGAAGTGTCTTCCCTGT 1201453 Query 289215 TCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATT 289273 |||||||| ||| | | ||| | || ||||| | |||||| || ||| | || || | Sbjct 1201454 CCCAGGTGGACCCACAAGAAGAGCACCTTTTGGAATTTTTGCGCCTAGC-GCCTCGTACT 1201512 Query 289274 TCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATC 289333 | | || ||| || || | |||| ||| | || | ||| ||||||||||| | Sbjct 1201513 TTTTGGGATTCTGTAGGAAGTGCACAAACTCCATGATCTCTTGTTTCGCCTCATCACAAC 1201572 Query 289334 CTGCTACATC 289343 | |||||||| Sbjct 1201573 CAGCTACATC 1201582 >seq1991 Length=3980371 Score = 105 bits (116), Expect = 2e-17 Identities = 164/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 156050 ACCATTCCTCTTGCCAC---CCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAG 156106 ||| ||||||||||||| ||||||| || |||||||| || | |||||||| | || Sbjct 851751 ACCTTTCCTCTTGCCACCACCCTGATCCACGTACCGAGCGGTGTCGTTGAAGACTCGAAG 851810 Query 156107 CATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCG 156166 ||| |||| ||| || ||||| || ||||| || || || |||| |||| | || Sbjct 851811 CATCGGAACAATGCCGTTGGATGTTCCATTTGTCCCACGTATATAACTTCCAGTAGCACG 851870 Query 156167 AACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTT 156226 | ||||||||| | || || || |||| |||| |||| |||||| ||||| Sbjct 851871 TATGTTATGAATAGACAAACCGATGCCTCCTGCTGATTTGCTAATTACAGCGCACTCCTT 851930 Query 156227 TACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 | |||| | | || || ||||| ||| |||| ||| ||| ||| |||| Sbjct 851931 CAACGTATCGTATATTCCCTCAATGCTATCCTCTTTCATACATATAAGAAAGCA 851984 >seq848 Length=4381129 Score = 100 bits (110), Expect = 8e-16 Identities = 163/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 156050 ACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAG 156106 ||| || |||||||||||| ||||| ||||||||||| || | ||||||||| | || Sbjct 3843636 ACCTTTTCTCTTGCCACCCCCTTGATCAACATACCGAGCGGTGTCATTGAAGACTCGAAG 3843695 Query 156107 CATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCG 156166 ||| |||| || || ||||| ||||| |||||||| |||| |||| | || Sbjct 3843696 CATCGGAACGATGCCGTTGGATTGTCCATTTGTTCCGCGTATATAACTTCCAGTCGCACG 3843755 Query 156167 AACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTT 156226 | ||||| | | | ||||||||||| | |||| ||| |||||| ||||| Sbjct 3843756 GATGTTATGCACAGACACACCAATACCACCAGCTGATTTGCTGATTACAGCGCACTCCTT 3843815 Query 156227 TACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCA 156280 | |||| | | || || ||||| ||| |||| ||| ||| ||| |||| Sbjct 3843816 CAATGTATCGTATATGCCCTCAATGCTATCCTCTTTCATGCATACGAGAAAGCA 3843869 >seq310 Length=2395884 Score = 89.7 bits (98), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||| | ||||| ||||||||||| || | |||||||||| ||||||||||||| Sbjct 1111051 TGCAAAAAGGTCTCTGACACGGGATGCACCCATGCCAACATACAGTTCTACAAATTCACT 1111110 Query 289146 AGCGGA--TACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 || || ||| ||||| | || | ||||| || || || || | || | |||| Sbjct 1111111 TGCTGAACAGCTT--ATGAAAGGAACGTCAGCTTCTCCAGCAACAGCTTTTGCTAAAAGT 1111168 Query 289204 GTCTTACCTGTTCCAGG 289220 ||||||||||||||||| Sbjct 1111169 GTCTTACCTGTTCCAGG 1111185 >seq1336 Length=1690830 Score = 86.0 bits (94), Expect = 2e-11 Identities = 181/263 (69%), Gaps = 18/263 (7%) Strand=Plus/Minus Query 61340 TCACAAGAAGAACCAAAATTGC-TG-ACGGCAGTATTAAGACAATCTTTAGTTTGACTAT 61397 || || |||||||||||| | | || |||| ||| ||| || ||||| ||||| || Sbjct 295071 TCCCATGAAGAACCAAAACTCCCTGCACGG-AGTGTTA-GAGTCTCTTTGGTTTGTGAAT 295014 Query 61398 CAAAAGCAGGGTTTTCAAT-AGTACAGTTGATAAAAACCATCAATTGCTCCCTAATAGCA 61456 ||||||| ||||| ||||| || || |||| ||||||| ||| || | | | | || | Sbjct 295013 CAAAAGCCGGGTTGTCAATTAGAGCA-TTGACAAAAACCCACAAGTGATTCTTCACAGTA 294955 Query 61457 GCAGGCTTAACATCAA------TGTGCTTCTTGGTCTTA------ATGAAAGCAGTAATT 61504 ||| |||| |||| ||| ||||||| |||| |||| |||| || Sbjct 294954 TGAGGTTTAAGGTCAAATTTCTTGTTCTTCTTGTTCTTGTTTTTTATGACAGCAACAAGA 294895 Query 61505 TTACGAATGATTTGATTTGTGATATAATCAACATGTTTCCCACCCTTGGATGTGAAAATT 61564 | | | || | ||| || | || || ||||| ||||||||||| ||| |||| Sbjct 294894 TGGCTTGTTATCTTATTAGTAACGTAGTCGACATGAGTCCCACCCTTGATTGTTGCAATT 294835 Query 61565 CCATTTACAAAACTGATTTGTGT 61587 ||||| ||||| |||| ||||| Sbjct 294834 CCATTCACAAAGCTGACCTGTGT 294812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471775886849444