Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1832 190 2e-43 seq513 127 2e-24 seq528 100 3e-16 >seq1832 Length=4053948 Score = 190 bits (210), Expect = 2e-43 Identities = 319/459 (69%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 73541 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGG 73600 ||||| || ||||| || || |||| | || | | | ||| | ||||||| || ||| Sbjct 887143 TTAACGGCCGCAGTTTCCACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGG 887202 Query 73601 GGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 73660 || || || |||||||||||| || || |||| |||||||||||| || |||| ||| Sbjct 887203 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 887262 Query 73661 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 73720 || || | ||||| | || ||||| |||||||||||| | | || |||||| |||| Sbjct 887263 GTTGCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCT 887322 Query 73721 GGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAG---CAGTTATCG-CAGT 73776 || |||| | || ||||| || ||| | || ||||| | || || | | | Sbjct 887323 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTTTCTGGTCCAATTGTTGTTTTT 887382 Query 73777 ATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTC 73836 || | | | || || || ||||| |||| ||| | |||||||||| |||||| Sbjct 887383 GTTTATG----TATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACCTAG 887438 Query 73837 ATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAAC 73896 || ||| | ||||| || ||||| | || | || | || || || || ||| || Sbjct 887439 TTTTGGTATAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 887498 Query 73897 TCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGC 73956 | || ||||||||||||||||| || || ||| || | || | || || ||||| || Sbjct 887499 GTTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGGGCTGCTTTGCTATGCGC 887558 Query 73957 CATACATGGTGCAACAGTACAGAACACATTGTATGAAGA 73995 || |||||||| || ||| | || || || | |||||| Sbjct 887559 TATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGA 887597 Score = 190 bits (210), Expect = 2e-43 Identities = 319/459 (69%), Gaps = 8/459 (2%) Strand=Plus/Plus Query 73541 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGG 73600 ||||| || ||||| || | |||| | || | | | ||| | ||||||| || ||| Sbjct 906898 TTAACGGCCGCAGTTTCCAATCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGG 906957 Query 73601 GGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 73660 || || || |||||||||||| || || |||| |||||||||||| || |||| ||| Sbjct 906958 GGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 907017 Query 73661 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 73720 || || | ||||| | || ||||| |||||||||||| | | || |||||| |||| Sbjct 907018 GTTGCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCT 907077 Query 73721 GGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAG---CAGTTATCG-CAGT 73776 || |||| | || ||||| || ||| | || ||||| | || || | | | Sbjct 907078 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTTTCTGGTCCAATTGTTGTTTTT 907137 Query 73777 ATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTC 73836 || | | | || || || ||||| |||| ||| | |||||||||| |||| | Sbjct 907138 GTTTATG----TATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACTTAG 907193 Query 73837 ATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAAC 73896 || ||||| ||||| || ||||| | || | || | || || || || ||| || Sbjct 907194 TTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGAC 907253 Query 73897 TCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGC 73956 || || ||||||||||||||||| || || ||| || | || | || || ||||| || Sbjct 907254 GCTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGGGCTGCTTTGCTATGCGC 907313 Query 73957 CATACATGGTGCAACAGTACAGAACACATTGTATGAAGA 73995 || |||||||| || ||| | || || || | |||||| Sbjct 907314 TATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGA 907352 >seq513 Length=378260 Score = 127 bits (140), Expect = 2e-24 Identities = 208/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 73535 AATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC 73594 ||||| ||||| || ||||| || || |||| | || | | | ||| | ||||||| Sbjct 131838 AATTTCTTAACGGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTA 131779 Query 73595 CTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGG 73654 || ||||| || || |||||||| ||| || || |||| |||||||||||| || ||| Sbjct 131778 CTATGGGGTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGG 131719 Query 73655 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAG 73714 | ||||| || | ||||| | || ||||| |||||||||||| | | || |||||| Sbjct 131718 ACTTTTGTTGCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAG 131659 Query 73715 ATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCA 73774 |||| || |||| | || ||||| | ||| | || ||||| | || || Sbjct 131658 CTTGCTCGATCTGTTCAATTGCGACCTTATGATGCAATCGCATTTTCTGGTCCAATTGCT 131599 Query 73775 GTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCT 73834 || || | || || || ||||| |||| ||| | |||||||||| |||||| Sbjct 131598 GTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACCT 131539 >seq528 Length=404557 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 73535 AATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTC 73594 ||||||||||| || ||||| || || ||| | | | | | ||| | |||| || Sbjct 134221 AATTTTTTAACGGCCGCAGTTTCTACTCCTACTACTAGTTTAGCGCATTCTTTATTATTA 134280 Query 73595 CTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGG 73654 || ||||| || || |||||||||||| || || |||| |||||||||||| || ||| Sbjct 134281 CTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGG 134340 Query 73655 AACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 73699 | ||||| || | |||| | || ||||| |||||||||||| Sbjct 134341 ACTTTTGTTGCTCTGTATGGTGCGTTCGGACTAATAGGTTTCATG 134385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572857760044960