Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq504 210 3e-48 seq20 176 6e-38 seq669 87.8 2e-11 >seq504 Length=2204878 Score = 210 bits (232), Expect = 3e-48 Identities = 227/298 (76%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | |||||| | ||| Sbjct 1297857 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGGGCCTCTGAGATCTGG 1297916 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || ||||||||||| || ||||| || ||||| |||||||||||| ||||||||| Sbjct 1297917 ACGTCCTTCATGAAACGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGGCGAAG 1297976 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| ||||| || || ||||| || | ||| | ||||||||| | Sbjct 1297977 AAGGCGAGGACGTGTTTGATGAAATGCTGCTCGCCGGAGGAGAGGGTTACCCAGTGGCGG 1298036 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 |||| || | || || |||||||||||||||| ||||| | ||| || |||||| Sbjct 1298037 AGGTCGTCGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTGGGCTTTCTTGTAC 1298096 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCG 869929 |||||||| | || | || | || ||||| | ||| ||||||| ||||||| || Sbjct 1298097 ATCTCCCAGATTTCAGGATACTGAATCGGGAACA-TACAGAAGCGGTCGGGGTTGGCG 1298153 Score = 127 bits (140), Expect = 2e-23 Identities = 197/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTT-GCTAAAGGCGAGGCCGGGCATGAGGCC 869232 ||| |||| ||||||||| || | ||||| | |||| | | |||| ||| || || Sbjct 1297572 TGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGAAAGTCAACCCCGG-CATCAGCCC 1297630 Query 869233 GCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGC 869292 |||||||| ||||| |||||||||||||| || || ||||| || || ||||| ||| Sbjct 1297631 CCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAATATTCCCTCCACGCA 1297690 Query 869293 GGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCAT 869352 ||| ||| ||| | ||||| || || | ||| ||| || ||||| | Sbjct 1297691 GGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGAGCC------GTCAATCCAGCGGAG 1297744 Query 869353 CGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 869412 |||||| | |||||| ||| || | || || || ||||| ||||| |||||||||| Sbjct 1297745 CGCCCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCGATTGCGCGGAAGAGGTGGTT 1297804 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 ||| || | || |||||||| || | |||| ||||| Sbjct 1297805 CTTCTCCGACGAGTCCTTGATGTAAGCCTCGAGGAGGAG 1297843 >seq20 Length=956477 Score = 176 bits (194), Expect = 6e-38 Identities = 195/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||| ||||| ||||||||||| ||||| ||||| | | || | | || Sbjct 871046 GAGTGTATGTTTTCGATTGCGATCTGGAAACCGTAGAAGGCGCGGGCTTCCGAGATCTGC 871105 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| || ||||| ||||| || |||||||||||| ||||||||| Sbjct 871106 ACCTCCTTCATGAAGCGTCCGGCTAGGTTTTCCAGGACGATGCCGTCGGAGGCGGCGAAG 871165 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || ||||| ||||| ||||| || || ||||||| | || | |||||||| | Sbjct 871166 AAGGCCAGAACGTGTTTGATGAAATGCTTCTCGTCGGTGGATAGGGTTTCCCAGTGGCGG 871225 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | | || || |||||||||||||||| ||||| ||||||||||||||| Sbjct 871226 AGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTAC 871285 Query 869873 ATCTCCCATACTTGCTGGTA 869892 |||||||| | ||| |||| Sbjct 871286 ATCTCCCAAATTTGTGGGTA 871305 Score = 105 bits (116), Expect = 8e-17 Identities = 189/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTT-GCTAAAGGCGAGGCCGGGCATGAGGCCGCGCT 869237 ||||||||| || |||| ||||| | |||| | | |||| ||| || ||||||| Sbjct 870766 ACCTTCGTCACGCGATATCAACTCGTTCGAGAAAGTCAACCCCGG-CATCAGACCGCGCT 870824 Query 869238 TCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 |||| ||||| || ||||||||||| || || ||||| || || || || ||| ||| | Sbjct 870825 TCTTCAGCCAGAATATGGCGCAGAAGCTTCCGGAGAAGAATATCCCTTCCACGCAGGCGA 870884 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCC 869357 | |||| | ||||||||| || ||| ||| || |||||| | |||| Sbjct 870885 ACGCGATTATCCGCTCGGCGAAACACTCGCCGCC------GTCGATCCAGCGGAGTGCCC 870938 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTT 869417 | | |||||| || ||| | || || || ||||| ||||| ||||| || ||| | Sbjct 870939 AATTGGCCTTCCTCTCCACGCAGGGGACGGTCTCGATTGCGCGGAAGAGCCTGTTCTTCT 870998 Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || | | ||||| | |||| |||| ||||| Sbjct 870999 CGTCGGAATCCTTTATGTAGGATTCGAGGAGGAG 871032 >seq669 Length=278079 Score = 87.8 bits (96), Expect = 2e-11 Identities = 147/208 (71%), Gaps = 10/208 (5%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCG---TGCCGA 1254402 |||||| |||||| ||| | ||| | ||||||||||||||||||||| | || | Sbjct 223392 TGGCCAACTCGCCGGGCAACACCAGCCTCACGGCGGTCTGGATCTCGCGAGAAGTGATGG 223451 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACG-GCCGGCCTCGGTGCC-GATGCGGTCGAT 1254460 ||| || |||||| | | ||||| || |||| | | ||| | | | |||| Sbjct 223452 TCGGCTT---CTTGTTGTACCGAGCCAGCCGAGCCGATTCCTGAGCCAGCTTC--TCGAA 223506 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 || ||||||| || |||||| | | ||| | |||| | ||||| || | ||| || Sbjct 223507 AATATCGTTGATGAAGCTGTTCATTATCCCCATGGCCTTGCTCGAGATCCCGATGTCTGG 223566 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||||||||| ||| ||||| Sbjct 223567 GTGGACCTGCTTGAGCACTTTGAAGATG 223594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106957672921204