Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2167 107 2e-18 seq310 95.1 1e-14 seq149 91.5 1e-13 seq2135 89.7 4e-13 seq1098 84.2 2e-11 >seq2167 Length=1051226 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| || || || || || || ||||| | ||| || | Sbjct 204214 ATGCAAATCTTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTCGAAAGTTCA 204155 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || ||| || || |||||||||||| | || ||| || Sbjct 204154 GACACAATCGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCAG 204095 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| || | ||| ||||| ||||| || |||| |||||| |||| |||||||| Sbjct 204094 CAAAGACTAATCTTTGCAGGTAAGCAGCTCGAAGATGGCAGAACGCTGGCTGATTACAAT 204035 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| |||||||| || | ||| | ||| |||| || || || || Sbjct 204034 ATTCAGAAAGAATCGACTCTCCACCTTGTGCTAAGGCTTCGTGGTGG 203988 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | |||||||| || || || |||| ||| | Sbjct 205126 ATGCAGATCTTTGTAAAGACTCTTACCGGCAAGACGATCACTCTCGAGGTCGAGAGTTCA 205067 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| || ||| || || ||||| | ||| ||| || Sbjct 205066 GATACGATCGACAACGTCAAAGCTAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAG 205007 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| |||||||| || || |||| | |||| | || |||||||| Sbjct 205006 CAGAGGTTAATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACCCTCGCAGATTACAAT 204947 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || |||||||||||||| | ||| | || |||| || || || || Sbjct 204946 ATCCAAAAAGAATCTACACTCCACCTTGTCCTAAGGCTTCGTGGTGG 204900 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| ||||| || || || || || || ||||| | ||| || | Sbjct 211401 ATGCAGATATTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTTGAAAGTTCA 211342 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | || ||| ||| ||| ||||||||||| | || |||||| Sbjct 211341 GACACTATCGATAATGTTAAAGCGAAAATTCAGGACAAAGAAGGGATTCCTCCGGATCAG 211282 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| || ||||| || || |||| |||| | ||||||||||| Sbjct 211281 CAAAGATTGATCTTTGCTGGGAAACAACTCGAAGATGGGCGAACCCTCGCGGATTACAAT 211222 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||| ||||| | ||| | || |||| || || || || Sbjct 211221 ATCCAGAAAGAGTCTACACTACACCTTGTCCTAAGGCTTCGTGGTGG 211175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || || || |||||||| || | ||| ||||| ||||| || Sbjct 203893 GACAAAGAAGGTATCCCTCCAGACCAGCAAAGACTGATCTTTGCCGGTAAGCAGCTCGAA 203834 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| | || ||||| ||||||||||| || || || | || ||||| | Sbjct 203833 GATGGTAGAACACTTGCCGATTATAACATTCAAAAGGAGTCGACTCTTCATTTGGTGCTG 203774 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 203773 CGATTGAGAGGAGGAA 203758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || || || |||||||| || | ||| || || || || || Sbjct 204349 GACAAAGAAGGGATCCCTCCAGACCAGCAAAGACTGATCTTTGCCGGAAAGCAACTTGAA 204290 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTAC 110469 |||| |||||| |||||||||||||||||||||| ||||| || Sbjct 204289 GATGGTAGAACATTGGCGGATTACAACATTCAAAAGGAATCAAC 204246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || ||||| |||||| | ||||| || ||||| || | ||| ||| || | Sbjct 204898 ATGCAGATTTTTGTGAAAACTCTTACCGGGAAGACCATCACTCTTGAAGTCGAGAGCTCA 204839 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| ||| | || ||| ||||| ||||| |||||| | || ||| || Sbjct 204838 -GATACGATCGATAATGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCA 204780 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | || | ||| || || || || || |||| |||| | || |||||||| Sbjct 204779 GCAAAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGTCGAACCCTCGCTGATTACAA 204720 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || ||||||||||| | ||| | || |||| || || || || Sbjct 204719 TATCCAGAAAGAATCTACACTCCACCTTGTCCTAAGGCTTCGTGGTGG 204672 >seq310 Length=2395884 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||||||||| ||| ||||||| ||||| || || |||| ||| | | Sbjct 1996064 ATGCAGATATTTGTCAAGACTCTAACCGGAAAAACTATAACTCTCGAGGTCGAGAGTTCC 1996123 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || || || ||||| ||||| | ||| || || Sbjct 1996124 GATACAATCGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGGATTCCCCCTGACCAG 1996183 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | || || ||||| || || |||| |||||| | || ||||||||| Sbjct 1996184 CAAAGGCTAATCTTCGCTGGCAAACAACTCGAAGATGGCAGAACCCTTGCAGATTACAAC 1996243 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| || ||||| Sbjct 1996244 ATCCAAAAGGAGTCTAC 1996260 >seq149 Length=2637241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || ||||| ||||||| ||||| || || ||||| |||| Sbjct 721758 AAAATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACAATCACTCTCGAAGTGGAGAGC 721817 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || |||||| ||||| ||||| | || |||| Sbjct 721818 TCCGACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGTATCCCGCCGGAT 721877 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || |||||||||||||| | | | || | || || ||| Sbjct 721878 CAGCAGCGCCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCCGGACCTTAGCCGACTAC 721937 Query 110450 AACATTCAAAAAGAATCTAC 110469 |||||||| || ||||| || Sbjct 721938 AACATTCAGAAGGAATCCAC 721957 >seq2135 Length=1067647 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||||||||| ||| | || || || ||||||||| | || ||| | Sbjct 902049 ATGCAGATATTTGTCAAGACTCTCACTGGGAAGACCATTACCTTGGAGGTTGAGAGCTCC 902108 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || ||| |||||| ||||| ||||| | ||| |||||| Sbjct 902109 GACACTATTGATAACGTCAAAGCCAAGATTCAAGACAAGGAAGGGATTCCCCCGGATCAG 902168 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| ||| || || ||| ||||||||| | || | || ||||||||| Sbjct 902169 CAGAGGTTGATTTTTGCAGGGAAGCAGTTGGAGGATGGTCGTACTCTTGCCGATTACAAC 902228 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGG 110498 || ||||| ||| || | ||| ||||| | || || |||||| Sbjct 902229 ATCCAAAAGGAAAGCACTCTTCACTTGGTGCTCAGGCT--GAGGGG 902272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||| | ||||| || ||||||||| | || ||| | Sbjct 902505 ATGCAGATTTTTGTCAAGACTCTCACCGGGAAGACCATTACCTTGGAGGTTGAGAGCTCC 902564 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || ||| |||||| ||||| ||||| | || ||| ||| Sbjct 902565 GACACTATTGATAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAA 902624 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | ||| || || ||| ||||||||| | || | || ||||||||| Sbjct 902625 CAAAGGCTGATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGTACTCTTGCCGATTACAAC 902684 Query 110453 ATTCAAAAAGA 110463 || ||||| || Sbjct 902685 ATCCAAAAGGA 902695 >seq1098 Length=1756062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || || || || || || || | ||| ||||||||| | || Sbjct 778295 GACAAAGAAGGAATACCTCCTGACCAGCAGAGGCTGATATTTGCTGGTAAACAGTTAGAA 778354 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| |||| |||||||| || ||||||||||| || | ||| | || || Sbjct 778355 GATGGCAGAACTTTGGCAGATTACAATATCCAAAAAGAATCGACCCTTCACCTCGTTTTG 778414 Query 110486 AGACTGCGAGGGGGAAAAA 110504 || ||| | || |||| || Sbjct 778415 AGGCTGAGGGGTGGAACAA 778433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412830470306516