Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq504 176 7e-38 seq20 154 2e-31 seq273 129 9e-24 seq669 116 6e-20 >seq504 Length=2204878 Score = 176 bits (194), Expect = 7e-38 Identities = 236/326 (72%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||| ||||||||| || || ||||| | |||| | |||| ||| || || |||| Sbjct 1297577 ACCCTCGTCGCGAGAAATTAACTCGTTCGAGAAAGTCAACCCCGG-CATCAGCCCCCGCT 1297635 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| ||||| |||||||| ||||| || || ||||| || || ||||| ||| ||| | Sbjct 1297636 TCTTCAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAATATTCCCTCCACGCAGGCGA 1297695 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 || |||| | ||||| || || | || ||| || ||||| | ||||| Sbjct 1297696 AGGCGACAATTCGCTCTGCGAATGATTCGGAGCCGTCA------ATCCAGCGGAGCGCCC 1297749 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | | ||||| ||| || |||| || || ||||| ||||| |||||||||| ||||| Sbjct 1297750 AATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCGATTGCGCGGAAGAGGTGGTTCTTCT 1297809 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | || |||||||| ||| | |||| |||||| ||| |||| ||||||||||| | Sbjct 1297810 CCGACGAGTCCTTGATGTAAGCCTCGAGGAGGAGACTGTACATCTCGGAGTGGATGTTCT 1297869 Query 794639 CGATGGCGATCTGGAAGCCATAAAAG 794664 |||||||||| |||||||| || ||| Sbjct 1297870 CGATGGCGATTTGGAAGCCGTAGAAG 1297895 Score = 161 bits (178), Expect = 2e-33 Identities = 185/249 (74%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||| | | ||||| ||||||||||| || ||||| || ||||| |||||||| Sbjct 1297901 GGCCTCTGAGATCTGGACGTCCTTCATGAAACGTCCGGCGAGATTCTCCAAAACGATGCC 1297960 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| |||||||||||||| ||||| || || ||||| || | ||| Sbjct 1297961 GTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAATGCTGCTCGCCGGAGGAGAG 1298020 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 | ||||||||| |||| || | ||||| |||||||||||||| |||||||| Sbjct 1298021 GGTTACCCAGTGGCGGAGGTCGTCGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGC 1298080 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 | ||| || |||||||||||||| || | || | || ||||||| | ||||| Sbjct 1298081 TTGGGCTTTCTTGTACATCTCCCAGATTTCAGGATACTGAATCGGGAACATACAGAAGCG 1298140 Query 796389 ATTGGGGTT 796397 | |||||| Sbjct 1298141 GTCGGGGTT 1298149 >seq20 Length=956477 Score = 154 bits (170), Expect = 2e-31 Identities = 231/326 (71%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||||||| || ||||| ||||| | |||| | |||| ||| || ||||||| Sbjct 870766 ACCTTCGTCACGCGATATCAACTCGTTCGAGAAAGTCAACCCCGG-CATCAGACCGCGCT 870824 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| ||||| || ||||| ||||| || || ||||| || || || || ||| ||| | Sbjct 870825 TCTTCAGCCAGAATATGGCGCAGAAGCTTCCGGAGAAGAATATCCCTTCCACGCAGGCGA 870884 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | ||| | ||||||||| ||| || ||| || |||||| | |||| Sbjct 870885 ACGCGATTATCCGCTCGGCGAAACACTCGCCGCCGTC------GATCCAGCGGAGTGCCC 870938 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | | ||||| || ||| |||| || || ||||| ||||| ||||| || ||||| Sbjct 870939 AATTGGCCTTCCTCTCCACGCAGGGGACGGTCTCGATTGCGCGGAAGAGCCTGTTCTTCT 870998 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || | | ||||| | ||||| |||| |||||| ||| |||| ||||| ||||||| Sbjct 870999 CGTCGGAATCCTTTATGTAGGATTCGAGGAGGAGGCTGTACATCTCGGAGTGTATGTTTT 871058 Query 794639 CGATGGCGATCTGGAAGCCATAAAAG 794664 |||| ||||||||||| || || ||| Sbjct 871059 CGATTGCGATCTGGAAACCGTAGAAG 871084 Score = 152 bits (168), Expect = 8e-31 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 796162 TGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCG 796221 || ||||||||||||||||| ||||| ||||| || |||||||||||| ||||||| Sbjct 871103 TGCACCTCCTTCATGAAGCGTCCGGCTAGGTTTTCCAGGACGATGCCGTCGGAGGCGGCG 871162 Query 796222 AAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGG 796281 || ||||| || ||||| ||||| || || ||||||| | || | |||||||| Sbjct 871163 AAGAAGGCCAGAACGTGTTTGATGAAATGCTTCTCGTCGGTGGATAGGGTTTCCCAGTGG 871222 Query 796282 ACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTG 796341 ||| | | ||||| |||||||||||||| |||||||| |||||||||||| Sbjct 871223 CGGAGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTG 871282 Query 796342 TACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||||||||| || || |||| | || || |||| Sbjct 871283 TACATCTCCCAAATTTGTGGGTATTGAATTGGAAACA 871319 >seq273 Length=2571979 Score = 129 bits (142), Expect = 9e-24 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||||||||||||||| || || ||||||||| |||||| |||||| | | | | Sbjct 1288489 TTGGTGACGGCCTTGGTACCTTCAGAAACGGCGTGCTTGGCCAACTCGCCGGGAAGCACC 1288548 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 | || ||||||||||||||||| |||| ||| ||| |||||| | ||| Sbjct 1288549 AATCGGACGGCGGTCTGGATCTCCCGGGAAGTGATGGTGGGCTTCTTGTTGTACCTAGCC 1288608 Query 1485595 AGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 || || |||| | | | ||| || |||| |||||||||| || ||||||||| Sbjct 1288609 AGACGCGCCGCCTCCTGGGCCAAT-TTCTCGAAGATGTCGTTGATGAAGCTGTTCATGAT 1288667 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| | ||||| || | ||| ||||| |||||||| ||||||||| Sbjct 1288668 TCCCATGGCCTTGCTCGAGATCCCGATGTCTGGGTGGACCTGCTTCAGCACCTTG 1288722 Score = 111 bits (122), Expect = 2e-18 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||||||||| || || || ||||||||| |||||| |||||| | | | | Sbjct 1285505 TTGGTGACGGCCTTGGTTCCTTCAGAAACGGCGTGCTTGGCCAACTCGCCGGGAAGCACC 1285446 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 | || |||||||| ||||| || || | ||| ||| |||||| | ||| Sbjct 1285445 AATCGGACGGCGGTTTGGATTTCCCGAGAAGTGATGGTGGGCTTCTTGTTGTACCTAGCC 1285386 Query 1485595 AGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 || || |||| | | | ||| || |||| |||||||||| || ||||||||| Sbjct 1285385 AGACGCGCCGCCTCCTGGGCCAAT-TTCTCGAAGATGTCGTTGATGAAGCTGTTCATGAT 1285327 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| | ||||| || | ||| ||||| |||||||| ||||||||| Sbjct 1285326 TCCCATGGCCTTGCTCGAGATCCCGATGTCCGGGTGGACCTGCTTCAGCACCTTG 1285272 >seq669 Length=278079 Score = 116 bits (128), Expect = 6e-20 Identities = 171/238 (72%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||||||||| || || |||||||||||| | |||| |||||| | | | | Sbjct 218682 TTGGTGACGGCCTTGGTTCCTTCAGAGACGGCGTGCTTCGCCAACTCGCCGGGGAGCACC 218741 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGG---GTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 || | |||||||||||| || || ||| ||| | ||| || |||||| | | Sbjct 218742 AGTCTCACGGCGGTCTGAATTTCACGGGAAGTGATGGTCGGCTT---CTTGTTGTACCTC 218798 Query 1485592 GCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 ||||| || |||| | | | ||| || |||| || ||||||| || |||||| Sbjct 218799 GCCAGACGCGCCGCCTCCTGCGCCAAT-TTCTCGAAAATATCGTTGATGAAGCTGTTCAT 218857 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | |||| |||| | ||| | ||| ||||| |||||||| ||||||||| Sbjct 218858 TATTCCCATGGCTTTGCTGGAAACGCCGATGTCAGGGTGGACCTGCTTCAGCACCTTG 218915 Score = 111 bits (122), Expect = 2e-18 Identities = 171/239 (72%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||||||||| || || || |||||||||||| |||||| |||||| ||| | | Sbjct 202007 TTGGTGACGGCCTTTGTTCCTTCAGAGACGGCGTGCTTGGCCAACTCGCCGGGCAACACC 201948 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGG---GTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 || | |||||||||||| || || ||| ||| | ||| || |||||| || Sbjct 201947 AGCCTCACGGCGGTCTGAATTTCACGGGAAGTGATGGTCGGCTT---CTTGTTGTACCGA 201891 Query 1485592 GCCAGGCG-GCCGGCCTCGGTGCC-GATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||| || |||| | | ||| | | | |||| || ||||||| || ||||| Sbjct 201890 GCCAGCCGAGCCGATTCCTGCGCCAGCTTC--TCGAAAATATCGTTGATGAAGCTGTTCA 201833 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | || ||| | ||| |||| | ||| | ||| ||||| |||||||| ||||||||| Sbjct 201832 TTATTCCCATGGCCTTGCTGGAAACGCCGATGTCAGGGTGGACCTGCTTCAGCACCTTG 201774 Score = 107 bits (118), Expect = 3e-17 Identities = 170/239 (71%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||| || ||||| || || || || |||||||| |||||| |||||| ||| | | Sbjct 223355 TTGGTAACCGCCTTTGTTCCTTCCGAAACGGCGTGTTTGGCCAACTCGCCGGGCAACACC 223414 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCG---GGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 || | ||||||||||||||||||||| ||| | ||| || |||||| || Sbjct 223415 AGCCTCACGGCGGTCTGGATCTCGCGAGAAGTGATGGTCGGCTT---CTTGTTGTACCGA 223471 Query 1485592 GCCAGGCG-GCCGGCCTCGGTGCC-GATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||| || |||| | | ||| | | | |||| || ||||||| || ||||| Sbjct 223472 GCCAGCCGAGCCGATTCCTGAGCCAGCTTC--TCGAAAATATCGTTGATGAAGCTGTTCA 223529 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||| | ||| | ||||| || | ||| ||||| |||||||||||||| ||| Sbjct 223530 TTATCCCCATGGCCTTGCTCGAGATCCCGATGTCTGGGTGGACCTGCTTGAGCACTTTG 223588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916011099471068