Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2135 107 2e-18 seq582 96.9 3e-15 seq149 95.1 1e-14 seq310 93.3 3e-14 seq2167 84.2 2e-11 >seq2135 Length=1067647 Score = 107 bits (118), Expect = 2e-18 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| ||| | || || || ||||| ||| | || |||| ||| Sbjct 902733 ATGCAGATTTTTGTCAAGACTCTCACTGGAAAGACCATCACCTTGGAGGTGGAGAGCT-C 902791 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || ||| |||||| || || ||||| | || ||| || Sbjct 902792 CGACACGATTGACAACGTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCGGACCA 902851 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||| ||||||| | || ||||||||||||| Sbjct 902852 GCAGAGGCTGATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGCACTTTGGCGGACTACAA 902911 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 |||||||||||||| || | ||| ||||| |||| || |||||| Sbjct 902912 TATTCAAAAGGAGTCCACTCTTCACTTGGTGCTGAGGTT--GAGGGG 902956 >seq582 Length=2128859 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| || || || || || ||||||||| |||| |||| ||| Sbjct 298988 ATGCAGATTTTCGTCAAGACCTTGACTGGAAAGACCATTACCCTCGAGGTGGAGAGCTC- 299046 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||| || || || || | ||| || || Sbjct 299047 CGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 299106 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||| || | || || || ||||| ||||||| | || |||| |||||||| Sbjct 299107 GCAGAGACTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACTTTGGCCGACTACAA 299166 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| ||||||||||| | ||| |||| Sbjct 299167 CATTCAGAAGGAGTCTACCCTTCACTTGGT 299196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || || || ||||| ||| | || ||| | | Sbjct 298304 ATGCAGATCTTTGTCAAGACCCTCACCGGAAAGACCATAACCCTTGAGGTCGAGAGTTCC 298363 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || || | || ||| ||| Sbjct 298364 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCGGACCAG 298423 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | || || || ||||||||||||| | || |||| ||||||||| Sbjct 298424 CAGAGACTTATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACTTTGGCTGACTACAAC 298483 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || ||||||||||| | ||| |||| Sbjct 298484 ATCCAGAAGGAGTCTACCCTCCACTTGGT 298512 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || | || || || ||||| ||| |||| ||| ||| Sbjct 291160 ATGCAGATCTTTGTCAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 291219 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| || || ||||| | ||| ||| || Sbjct 291220 -GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCGGACCA 291278 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||||||||||| | || |||| |||||||| Sbjct 291279 GCAGAGGCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGCCGCACTTTGGCTGACTACAA 291338 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||||||||| | ||| |||| Sbjct 291339 CATCCAGAAGGAGTCTACCCTCCACTTGGT 291368 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || || || ||| | ||| ||| |||||||||||||| | ||| || || ||||||||| Sbjct 298169 GACAAGGAGGGCATTCCCCCGGACCAGCAGAGACTTATATTTGCCGGAAAGCAGCTGGAG 298228 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || | | || |||| ||||||||||| || ||||||||||| | ||| |||| Sbjct 298229 GATGGCCGCACTTTGGCCGACTACAACATCCAGAAGGAGTCTACCCTCCACTTGGT 298284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || ||||| | || ||||| ||||| ||| | || ||| ||| Sbjct 290704 ATGCAAATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAAAGCTC- 290762 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || || || ||||| ||||| | ||| ||| || Sbjct 290763 CGACACAATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAAGGAATTCCCCCGGACCA 290822 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| || |||||||| ||||| | | || | || |||||||| Sbjct 290823 GCAAAGGCTCATCTTTGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCGCCGACTACAA 290882 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| ||||||||||| || | ||| |||| Sbjct 290883 CATCCAAAAGGAGTCAACTCTCCACTTGGT 290912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || |||| || || ||||| ||| |||| ||| ||| Sbjct 291844 ATGCAGATCTTCGTCAAGACCCTAACCGGAAAGACCATCACCCTCGAGGTCGAGAGCTCT 291903 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| ||||| || || | || || || Sbjct 291904 -GACACCATCGACAACGTGAAGGCTAAGATCCAGGATAAGGAGGGGATCCCACCAGACCA 291962 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| || || || ||||| || |||| | ||| |||| |||||||| Sbjct 291963 GCAGAGGCTGATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACATTGGCTGACTACAA 292022 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||| || |||||||| || ||||| |||| |||| || |||||| Sbjct 292023 CATCCAGAAGGAGTCGACTCTGCACTTGGTTCTGAGGTT--GAGGGG 292067 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||| ||||||||||| || | ||| || || ||||| ||||| | | || |||| || Sbjct 298645 GGACCAGCAGAGACTCATCTTTGCCGGGAAGCAGCTTGAGGATGGCCGCACTTTGGCCGA 298704 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||| || |||||||| || |||||| |||| ||||| | || || || Sbjct 298705 CTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTTCTGAGACTTCGTGGTGG 298758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| || | || || || ||||| ||| ||||| |||| ||| Sbjct 298760 ATGCAGATTTTCGTCAAGACCCTTACTGGGAAGACCATCACCCTCGAAGTGGAGAGCTC- 298818 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | | || || ||||| || || |||||| | ||| |||||| Sbjct 298819 CGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCA 298878 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||| | || | ||| || || ||||| ||||| | || |||| || || || Sbjct 298879 GCAAAGATTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGTACTTTGGCAGATTATAA 298938 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||||||||| |||| |||| Sbjct 298939 CATCCAGAAGGAGTCTACACTGCATTTGGT 298968 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || || || || || ||||| ||| | || ||| ||| Sbjct 299216 ATGCAGATCTTTGTCAAGACCTTGACCGGGAAGACCATCACCCTTGAGGTCGAGAGCTCT 299275 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| ||||| || || | || || || Sbjct 299276 -GACACCATCGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGGATCCCACCAGACCA 299334 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| || || || ||||| || |||| | ||| |||| |||||||| Sbjct 299335 GCAGAGGCTGATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACATTGGCTGACTACAA 299394 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 ||| || |||||||| || ||||| |||| |||| || |||||| Sbjct 299395 CATCCAGAAGGAGTCGACTCTGCACTTGGTTCTGAGGTT--GAGGGG 299439 >seq149 Length=2637241 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GC 107611 ||||||||||| || || ||||| |||| || ||||| || || ||||| |||| || Sbjct 721758 AAAATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACAATCACTCTCGAAGTGGAGAGC 721817 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | ||| || ||| | | || || ||||| || || ||||| | || ||| Sbjct 721818 T-CCGACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGTATCCCGCCGGA 721876 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 ||||||| | || || | || || |||||||||||||||| | || | || ||||| Sbjct 721877 TCAGCAGCGCCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCCGGACCTTAGCCGACTA 721936 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 ||||||||| ||||| || || Sbjct 721937 CAACATTCAGAAGGAATCCAC 721957 >seq310 Length=2395884 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| ||||||||| | || || |||||||| || | || ||| ||| Sbjct 1996292 ATGCAAATTTTCGTCAAAACTCTCACCGGTAAAACCATCACTCTTGAGGTTGAGAGCT-C 1996350 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | ||||| |||||| ||||| |||||| | ||| || || Sbjct 1996351 AGACACAATCGACAATGTAAAGGCAAAGATCCAAGATAAGGAAGGCATCCCCCCTGACCA 1996410 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | |||| ||| ||||| || || || || | || ||| | || || ||||| Sbjct 1996411 GCAGAGATTGATTTTTGCTGGTAAGCAACTTGAAGATGGCAGAACCCTTGCAGATTACAA 1996470 Query 107735 CATTCAAAAGGAGTCTAC 107752 || || |||||||| || Sbjct 1996471 TATCCAGAAGGAGTCCAC 1996488 >seq2167 Length=1051226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 || |||||||| | || || ||||| ||||| || | ||| ||||| ||||| || Sbjct 203893 GACAAAGAAGGTATCCCTCCAGACCAGCAAAGACTGATCTTTGCCGGTAAGCAGCTCGAA 203834 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | |||| | || || || ||||||||||||||||| || | || ||||| || Sbjct 203833 GATGGTAGAACACTTGCCGATTATAACATTCAAAAGGAGTCGACTCTTCATTTGGTGCTG 203774 Query 107769 AGATTGCGAGGGGGAA 107784 ||||| |||| |||| Sbjct 203773 CGATTGAGAGGAGGAA 203758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398866046780068