Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2167 125 1e-23 seq2047 96.9 5e-15 seq310 93.3 7e-14 seq1098 87.8 3e-12 >seq2167 Length=1051226 Score = 125 bits (138), Expect = 1e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||| || ||||| || |||||| | || || ||| | | Sbjct 204213 TGCAAATCTTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTCGAAAGTTCAG 204154 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||||| ||| ||||||||||| || || || || | Sbjct 204153 ACACAATCGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCAGC 204094 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||||||||| || | || ||| |||||| | | ||||| |||| Sbjct 204093 AAAGACTAATCTTTGCAGGTAAGCAGCTCGAAGATGGCAGAACGCTGGCTGATTACAATA 204034 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || |||||||||||| |||| Sbjct 204033 TTCAGAAAGAATCGACTCTCCA 204012 Score = 120 bits (132), Expect = 5e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||||| || ||||| ||||| ||| | || || || | | Sbjct 210944 TGCAAATCTTTGTCAAGACATTGACCGGAAAGACAATCACTTTAGAAGTTGAGAGTTCGG 210885 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | ||||| || ||||| ||| |||||||| || |||||||| || | Sbjct 210884 ACACTATCGACAATGTTAAGGCGAAAATCCAAGACAAAGAAGGAATCCCACCCGACCAGC 210825 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || ||||||||||| || | || ||| ||| ||| | | |||||||| | Sbjct 210824 AGAGATTGATCTTTGCAGGTAAGCAGCTGGAAGATGGTAGGACGCTTGCCGATTATAACA 210765 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || |||||| | ||||| ||| | || || || ||||| Sbjct 210764 TCCAAAAGGAGTCGACTCTTCATTTGGTACTGCGGTTGAGGGGAGG 210719 Score = 89.7 bits (98), Expect = 8e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || || ||||| || ||| | || || || | || Sbjct 203757 TGCAAATCTTCGTCAAGACTTTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGTTCCG 203698 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| || || ||| ||| ||||| |||||||| || || | Sbjct 203697 ATACAATCGACAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATTCCACCGGACCAGC 203638 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| ||||| ||||| || ||||| | || || | ||| | | |||||||||| Sbjct 203637 AAAGGCTCATCTTTGCTGGGAAACAGCTCGAAGACGGACGCACGCTTGCCGATTATAATA 203578 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || || || || |||| Sbjct 203577 TCCAGAAGGAGTCCACCCTCCA 203556 Score = 89.7 bits (98), Expect = 8e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| || || || || ||||| || ||| | || || || | | Sbjct 210716 TGCAAATCTTCGTAAAGACTTTGACGGGCAAAACGATCACTTTGGAGGTGGAGAGTTCGG 210657 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| || || ||| ||| ||||| |||||||| || || | Sbjct 210656 ATACAATCGACAATGTGAAAGCAAAGATTCAAGATAAGGAAGGGATTCCACCGGACCAGC 210597 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| ||||| ||||| || || || | || || | ||| | | |||||||||| Sbjct 210596 AAAGGCTCATCTTTGCTGGGAAGCAGCTCGAAGACGGACGCACGCTTGCCGATTATAATA 210537 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || || || ||| |||| Sbjct 210536 TCCAGAAGGAGTCAACTCTCCA 210515 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| | || || |||||||| ||| | || || ||| | | Sbjct 204669 TGCAGATTTTTGTAAAAACTCTTACCGGCAAAACAATCACTTTGGAGGTTGAAAGTTCAG 204610 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| ||||| ||| || ||||| || || || || || | Sbjct 204609 ACACAATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGGATCCCTCCAGACCAGC 204550 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || || || || || ||| | || ||| | |||| | | ||||| |||| Sbjct 204549 AAAGATTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGAACCCTCGCTGATTACAATA 204490 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | || |||||||||||| ||||| Sbjct 204489 TCCAGAAAGAATCGACTCTCCAT 204467 Score = 86.0 bits (94), Expect = 1e-11 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || | || || || || || ||| | || || || | | Sbjct 205125 TGCAGATCTTTGTAAAGACTCTTACCGGCAAGACGATCACTCTCGAGGTCGAGAGTTCAG 205066 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| |||||| ||| ||| ||||| ||||| || || || | Sbjct 205065 ATACGATCGACAACGTCAAAGCTAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAGC 205006 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| ||||||||| | || ||| |||| | ||||||| |||| Sbjct 205005 AGAGGTTAATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACCCTCGCAGATTACAATA 204946 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | ||||||||||| || |||| Sbjct 204945 TCCAAAAAGAATCTACACTCCA 204924 >seq2047 Length=1241070 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||||||||| || |||||||| || ||| | || || || ||||||||||| || ||| Sbjct 887321 AAAGAAGGCATACCGCCCGATCAGCAGAGATTGATATTCGCCGGTAAACAATTGGAAGAT 887262 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 ||||||| | ||||||||||| || ||||||||||| |||| | || | || Sbjct 887261 GGACGAACGTTGGCGGATTATAATATCCAGAAAGAATCGACGCTCCACCTTGTTCTGAGA 887202 Query 146247 TTAAGAGGAGGTA 146259 | || ||||||| Sbjct 887201 CTCAGGGGAGGTA 887189 >seq310 Length=2395884 Score = 93.3 bits (102), Expect = 7e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || || || || || || ||| | || || ||| | | Sbjct 1997433 TGCAAATCTTTGTCAAGACTTTGACTGGGAAGACTATCACTTTGGAGGTGGAAAGTTCTG 1997492 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || ||||| || ||||||||| || ||||| ||||||| Sbjct 1997493 ATACGATTGACAATGTCAAGGCGAAAATCCAGGATAAAGAAGGGATCCCACCTGATCAAC 1997552 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || |||||||| || || |||| ||| | | || | | |||||||||| Sbjct 1997553 AGAGGCTTATCTTTGCAGGCAAGCAGCTAGAAGATGGTCGTACACTTGCGGATTATAATA 1997612 Query 146212 TACAAAAAGAATCGAC 146227 | || || ||||| || Sbjct 1997613 TCCAGAAGGAATCCAC 1997628 Score = 87.8 bits (96), Expect = 3e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || |||||||| ||||| | || || ||| | | Sbjct 1997205 TGCAGATTTTTGTCAAGACTTTGACCGGAAAAACCATTACACTGGAGGTTGAAAGTTCAG 1997264 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| || ||||| ||| || ||||| ||||| || || || | Sbjct 1997265 ACACGATCGACAATGTGAAGGCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAGC 1997324 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||||||||| || | || ||| || || | |||||||||||| Sbjct 1997325 AACGTTTGATCTTTGCAGGTAAGCAGCTCGAAGATGGGAGGACACTTGCAGATTATAATA 1997384 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || ||||| | ||| | || || || || ||||| || Sbjct 1997385 TCCAAAAGGAGTCGACGCTTCATCTGGTTTTGCGGTTGAGAGGCGG 1997430 >seq1098 Length=1756062 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 |||||||| || || || || || || || || || ||||| |||||||| ||||| ||| Sbjct 778298 AAAGAAGGAATACCTCCTGACCAGCAGAGGCTGATATTTGCTGGTAAACAGTTAGAAGAT 778357 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGAC 146227 ||||| || ||||||| ||||| |||||||||||||| Sbjct 778358 GGCAGAACTTTGGCAGATTACAATATCCAAAAAGAATCGAC 778398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786144662499040