Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2167 131 2e-25 seq310 100 3e-16 seq2135 98.7 1e-15 seq1098 86.0 6e-12 >seq2167 Length=1051226 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || |||| || ||||||| || || || ||||| ||||| |||||| Sbjct 203760 CCTCCTCTCAATCGCAGCACCAAATGAAGAGTCGACTCCTTTTGAATGTTATAATCGGCA 203819 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || |||||||| || ||||| ||| ||||||| | |||||| || ||||| Sbjct 203820 AGTGTTCTACCATCTTCGAGCTGCTTACCGGCAAAGATCAGTCTTTGCTGGTCTGGAGGG 203879 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| || | | || | ||||||| ||| ||| Sbjct 203880 ATACCTTCTTTGTCCTGGATTTTCGCCTTGACATTGTCGATTGTGTCTGAACTTTCAACT 203939 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || |||||||| |||||||| |||||||| Sbjct 203940 TCCAAAGTGATTGTCTTTCCAGTCAATGTCTTTACGAAAATTTGCAT 203986 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137214 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 137273 |||||| ||||| || || |||||||| | || | | |||||||||||||| || Sbjct 211204 TGTAGACTCTTTCTGGATATTGTAATCCGCGAGGGTTCGCCCATCTTCGAGTTGTTTCCC 211263 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 |||| |||||| | ||||||||| ||||| || ||||||||||| |||||| ||| Sbjct 211264 AGCAAAGATCAATCTTTGCTGATCCGGAGGAATCCCTTCTTTGTCCTGAATTTTCGCTTT 211323 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||||||| ||| ||||| | ||| | |||||| || |||||||| Sbjct 211324 AACATTATCGATAGTGTCTGAACTTTCAACTTCCAAAGTAATCGTCTTTCCAGTCAATGT 211383 Query 137394 TTTTACGAATATTTGCAT 137411 || |||||||| ||||| Sbjct 211384 CTTGACGAATATCTGCAT 211401 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || |||||||| || || |||||||| || || || |||||||| || ||||| Sbjct 204018 GTCGATTCTTTCTGAATATTGTAATCAGCCAGCGTTCTGCCATCTTCGAGCTGCTTACCT 204077 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | |||||| || ||||| |||||||||||||| ||||| ||| Sbjct 204078 GCAAAGATTAGTCTTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTGGCTTTA 204137 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||||| ||| ||||| | ||| | |||||| || |||||||| Sbjct 204138 ACATTGTCGATTGTGTCTGAACTTTCGACTTCCAAAGTAATCGTCTTTCCAGTCAATGTC 204197 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| |||||||| Sbjct 204198 TTGACGAAGATTTGCAT 204214 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 137194 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 137253 ||||||| || | ||| | || || || ||||| |||||||| || | ||| || Sbjct 210956 AAACGCAGCACAAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCTGCAAGTGTTCTA 211015 Query 137254 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 137313 |||||| |||||||| |||||| |||||| | ||||| || ||||| || |||||| Sbjct 211016 CCGTCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCCGGAGGGATCCCTTCT 211075 Query 137314 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTC 137373 ||||| |||||| ||| | | || | ||||||| ||| || || | ||| Sbjct 211076 TTGTCCTGGATTTTTGCTTTAACATTATCAATTGTGTCTGAACTTTCAACCTCCAAAGTA 211135 Query 137374 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||||| |||||||| || || ||||| || ||||| Sbjct 211136 ATCGTCTTTCCGGTCAACGTCTTAACGAAAATCTGCAT 211173 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 137194 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 137253 || ||||| || | ||| | || ||||| ||||| ||||||||||| || ||| || Sbjct 204225 AACCGCAACACAAGATGGAGAGTTGATTCCTTTTGAATGTTGTAATCCGCCAATGTTCTA 204284 Query 137254 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 137313 ||||| ||||| || || ||| ||||||| | |||||| || ||||| || |||||| Sbjct 204285 CCATCTTCAAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGAGGGATCCCTTCT 204344 Query 137314 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTC 137373 ||||| ||||| ||| | | || | ||||||| ||| || || | ||| Sbjct 204345 TTGTCTTGGATTTTGGCTTTAACGTTGTCGATTGTGTCTGAACTTTCGACCTCCAAAGTG 204404 Query 137374 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | ||||| || ||||| || || || || || ||||| Sbjct 204405 ATTGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 204442 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137214 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 137273 |||||||||||| || || |||||||| | || | | ||||||||||||||| || Sbjct 211432 TGTAGATTCTTTCTGGATATTGTAATCCGCGAGGGTTCGCCCGTCTTCGAGTTGTTTCCC 211491 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 |||| |||| || | |||||||| ||||| || ||||| || || |||||| || Sbjct 211492 AGCAAAGATTAGCCTCTGCTGATCCGGAGGAATTCCTTCCTTATCTTGAATTTTAGACTT 211551 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || || || |||| | || || || | ||| | |||||| || || | || Sbjct 211552 GACGTTGTCTACGGTATCTGAGCTCTCGACCTCGAGAGTGATCGTCTTACCAGTAAGAGT 211611 Query 137394 TTTTACGAATATTTGCAT 137411 |||||| ||||| ||||| Sbjct 211612 TTTTACAAATATCTGCAT 211629 Score = 104 bits (114), Expect = 2e-17 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 137214 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG--TCTTCGAGTTGTTTA 137271 |||||||||||| || || |||||||| | || |||| ||||||||||| || Sbjct 204701 TGTAGATTCTTTCTGGATATTGTAATCAGCGAGGGT--TCGACCATCTTCGAGTTGCTTG 204758 Query 137272 CCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGT 137331 |||||| |||||| | |||||| || ||||| |||||||| ||||| || ||| | Sbjct 204759 CCAGCAAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCT 204818 Query 137332 TTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAAT 137391 || | | || | ||| |||| | || ||||||| ||| | ||||| ||||| | Sbjct 204819 TTGACATTATCGATCGTATCTGAGCTCTCGACTTCAAGAGTGATGGTCTTCCCGGTAAGA 204878 Query 137392 GTTTTTACGAATATTTGCAT 137411 ||||| || || || ||||| Sbjct 204879 GTTTTCACAAAAATCTGCAT 204898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| | || |||| || ||||||| || || || ||||| ||||| |||||| Sbjct 210719 CCTCCCCTCAACCGCAGTACCAAATGAAGAGTCGACTCCTTTTGGATGTTATAATCGGCA 210778 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| || || ||||| ||| |||||| | ||||| ||||| || Sbjct 210779 AGCGTCCTACCATCTTCCAGCTGCTTACCTGCAAAGATCAATCTCTGCTGGTCGGGTGGG 210838 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||||| || | | || | ||||| | || ||| Sbjct 210839 ATTCCTTCTTTGTCTTGGATTTTCGCCTTAACATTGTCGATAGTGTCCGAACTCTCAACT 210898 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| ||||||||||| || || || |||||||| Sbjct 210899 TCTAAAGTGATTGTCTTTCCGGTCAATGTCTTGACAAAGATTTGCAT 210945 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137214 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 137273 ||||||||||||||| || |||||||| | || | ||||||||||||||||| Sbjct 204929 TGTAGATTCTTTTTGGATATTGTAATCTGCGAGGGTTCGGCCATCTTCGAGTTGTTTACC 204988 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 |||| |||| | | ||||| || || || || ||||| || || |||||| ||| Sbjct 204989 AGCAAAGATTAACCTCTGCTGGTCCGGGGGAATTCCTTCCTTATCTTGAATTTTAGCTTT 205048 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||| |||| || || || | ||| | |||||||||||| | || Sbjct 205049 GACGTTGTCGATCGTATCTGAACTCTCGACCTCGAGAGTGATCGTCTTGCCGGTAAGAGT 205108 Query 137394 TTTTACGAATATTTGCAT 137411 ||||| || || ||||| Sbjct 205109 CTTTACAAAGATCTGCAT 205126 >seq310 Length=2395884 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 137194 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 137253 ||||||||||| | ||||| || || || || || || |||||||| || || ||| Sbjct 1997193 AAACGCAAAACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCTGCCAAGGTCCTC 1997134 Query 137254 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 137313 |||||||||||||| || || |||||| | ||||| || ||||| || || || Sbjct 1997133 CCATCTTCGAGTTGTTTGCCTGCGAAGATCAATCTCTGCTGGTCTGGAGGAATTCCCTCC 1997074 Query 137314 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTC 137373 ||||| ||||||| || | | || | ||||||| | ||| || || | || Sbjct 1997073 TTGTCTTGAATTTTTGCCTTCACGTTATCGATGGTGTCTGAGCTTTCAACCTCCAATGTA 1997014 Query 137374 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || || |||||||| || || ||||| || ||||| Sbjct 1997013 ATGGTTTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 1996976 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| | ||||||||||| | ||||| || || || || || || |||||||| Sbjct 1996975 GCCTCCCCTCAAACGCAAAACAAGATGAAGGGTCGACTCCTTCTGGATATTGTAATCTGC 1996916 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || ||| |||||||||||||| || ||| | |||| | ||||| || ||||| Sbjct 1996915 CAAGGTCCTCCCATCTTCGAGTTGTTTGCCTGCAAATATCAATCTCTGCTGGTCTGGAGG 1996856 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| |||||| || | | || | ||||||| ||| || Sbjct 1996855 AATTCCCTCCTTGTCTTGAATTTTCGCCTTGACGTTATCAATGGTGTCTGAACTTTCAAC 1996796 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || |||||||| || || ||||| || ||||| Sbjct 1996795 CTCCAATGTAATGGTTTTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 1996748 >seq2135 Length=1067647 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 ||||| || ||||| |||||||||||| | |||| | ||||||||||||||| ||| Sbjct 901789 GTAGACTCCTTTTGAATGTTGTAATCGGCAAGAGTGCGCCCGTCTTCGAGTTGTTTGCCA 901730 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||||| | |||||| || ||||| || ||||| ||||| || || || Sbjct 901729 GCAAAGATCAACCTTTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTC 901670 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||| | | ||| || || | || | ||||| ||||||| ||| Sbjct 901669 ACGTTGTCGATGGTGTCCGAGCTTTCCACCTCGAGGGTGATGGTCTTTCCGGTCAGGGTT 901610 Query 137395 TTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 901609 TTCACAAAGATCTGCAT 901593 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 ||||| || || || ||||||||||| | |||| | ||||||||||||||| ||| Sbjct 902017 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTGCGCCCGTCTTCGAGTTGTTTGCCA 901958 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||||| | ||||| || || || ||||| || ||||| || || ||| Sbjct 901957 GCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCTTTA 901898 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | |||||| | || ||||||| || | ||||| || || | || Sbjct 901897 ACGTTGTCAATCGTGTCAGAACTCTCGACTTCAAGGGTGATAGTCTTCCCAGTGAGGGTC 901838 Query 137395 TTTACGAATATTTGCATA 137412 || || ||||| |||||| Sbjct 901837 TTGACAAATATCTGCATA 901820 >seq1098 Length=1756062 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 |||||| | |||| || ||||||||||| || |||||||| || || || || Sbjct 778414 CAAAACGAGGTGAAGGGTCGATTCTTTTTGGATATTGTAATCTGCCAAAGTTCTGCCATC 778355 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | |||||||||||| | ||||| | ||||| || |||||||| ||||||||||| Sbjct 778354 TTCTAACTGTTTACCAGCAAATATCAGCCTCTGCTGGTCAGGAGGTATTCCTTCTTTGTC 778295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488530491758400