Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2167 104 2e-17 seq2135 102 5e-17 seq149 91.5 1e-13 seq582 89.7 3e-13 seq310 89.7 3e-13 seq1 84.2 1e-11 >seq2167 Length=1051226 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||||||| | ||| | ||| ||||| ||| ||||| |||||||| || | Sbjct 210947 CCGCCCCTCAAACGCAGCACAAGATGGAGAGTCGACTCCTTTTGGATGTTGTAGTCTGCA 211006 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | |||| || | |||||| || ||||| ||||| | |||||| || | || Sbjct 211007 AGTGTTCTACCGTCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCCGGAGGG 211066 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||||||||||| ||||| || || ||||| || | ||||| ||| ||| Sbjct 211067 ATCCCTTCTTTGTCCTGGATTTT-TGCTTTAACATTATCAATTGTGTC---TGAACTTTC 211122 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || ||||| || || || ||||| || || || |||||||| Sbjct 211123 AACCTCCAAAGTAATCGTCTTTCCGGTCAACGTCTTAACGAAAATCTGCAT 211173 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||||||| || | ||||||||| ||||| ||| ||||| ||||| ||||||| Sbjct 203760 CCTCCTCTCAATCGCAGCACCAAATGAAGAGTCGACTCCTTTTGAATGTTATAATCGGCA 203819 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || || | || || |||||||| |||| | ||||| ||| | || Sbjct 203820 AGTGTTCTACCATCTTCGAGCTGCTTACCGGCAAAGATCAGTCTTTGCTGGTCTGGAGGG 203879 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | |||||||||||| |||||| | | |||| ||| | ||||| ||| ||| Sbjct 203880 ATACCTTCTTTGTCCTGGATTTTC-GCCTTGACATTGTCGATTGTGTC---TGAACTTTC 203935 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || || || ||||| || || ||||| Sbjct 203936 AACTTCCAAAGTGATTGTCTTTCCAGTCAATGTCTTTACGAAAATTTGCAT 203986 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||| || ||||| | ||| ||||| || ||||| ||||||||||| | Sbjct 204216 CCACCCCTCAACCGCAACACAAGATGGAGAGTTGATTCCTTTTGAATGTTGTAATCCGCC 204275 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| | | || || | ||| ||||||||||| |||| | ||||| ||| | || Sbjct 204276 AATGTTCTACCATCTTCAAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGAGGG 204335 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||||||||||| ||||| | || ||| | ||| | ||||| ||| ||| Sbjct 204336 ATCCCTTCTTTGTCTTGGATTTT-GGCTTTAACGTTGTCGATTGTGTC---TGAACTTTC 204391 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || || || || ||||| |||||||| Sbjct 204392 GACCTCCAAAGTGATTGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCAT 204442 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || ||||| || | |||||||| ||||| ||| ||||| ||||| ||||||| Sbjct 210719 CCTCCCCTCAACCGCAGTACCAAATGAAGAGTCGACTCCTTTTGGATGTTATAATCGGCA 210778 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || |||| || || || ||||| ||||| | |||||| || | || Sbjct 210779 AGCGTCCTACCATCTTCCAGCTGCTTACCTGCAAAGATCAATCTCTGCTGGTCGGGTGGG 210838 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| | | ||||| ||| | ||||| || || Sbjct 210839 ATTCCTTCTTTGTCTTGGATTTTC-GCCTTAACATTGTCGATAGTGTCCGAACTCTCAAC 210897 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || |||||||| ||||| Sbjct 210898 TTCTAAAGTGATTGTCTTTCCGGTCAATGTCTTGACAAAGATTTGCAT 210945 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 ||||| || |||||| || || |||||||| | ||| || || | || || | |||| Sbjct 211199 TGTAGTGTAGACTCTTTCTGGATATTGTAATCCGCGAGGGTTCGCCCATCTTCGAGTTGT 211258 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| ||||| | |||||||| | || | ||||||||||| ||||||| Sbjct 211259 TTCCCAGCAAAGATCAATCTTTGCTGATCCGGAGGAATCCCTTCTTTGTCCTGAATTTTC 211318 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTCCACGTCAACCGTGATCGTTTTACC 33722 | || ||||| || | ||||| ||| ||| || || | || ||||| || || Sbjct 211319 -GCTTTAACATTATCGATAGTGTC---TGAACTTTCAACTTCCAAAGTAATCGTCTTTCC 211374 Query 33723 TGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || |||||||| Sbjct 211375 AGTCAATGTCTTGACGAATATCTGCAT 211401 >seq2135 Length=1067647 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | ||| | ||||| || || || ||| ||||| ||||||||||||| Sbjct 901820 ACCCCCTCTGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCGGC 901761 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | |||||| || ||||| ||||| | ||||| || | || Sbjct 901760 AAGAGTGCGCCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAACCTTTGCTGGTCCGGAGG 901701 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| || || ||| || | ||| | |||||| ||| || Sbjct 901700 GATCCCTTCCTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATGGTGTCCGAGCT---TT 901645 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | ||||| || || || || | ||||| |||||||||||||| Sbjct 901644 CCACCTCGAGGGTGATGGTCTTTCCGGTCAGGGTTTTCACAAAGATCTGCAT 901593 Score = 95.1 bits (104), Expect = 8e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || |||||||| || ||||| ||||||||||||| || || || | || || Sbjct 902258 CACCAAGTGAAGAGTGCTTTCCTTTTGGATGTTGTAATCGGCAAGAGTACGACCATCCTC 902199 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 ||| || || || ||||||||||| | ||||||||| | || | ||||| ||||| Sbjct 902198 CAACTGCTTCCCTGCAAAAATCAACCTCTGCTGATCCGGGGGAATCCCTTCCTTGTC 902142 Score = 89.7 bits (98), Expect = 3e-13 Identities = 166/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| | | |||||| || ||||||||||| ||||| ||| Sbjct 902515 AAAATCTGCATCCCACCCCTCAGCCTGAGCACCAAGTGAAGAGTGCTCTCCTTTTGGATG 902456 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | || ||||| | || || | || || || ||||| ||||| | |||| Sbjct 902455 TTGTAATCCGCAAGAGTGCGACCATCTTCAAGCTGCTTGCCAGCAAAGATCAACCTCTGC 902396 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | || || ||||| || || | || ||| | ||| | |||||| Sbjct 902395 TGGTCCGGGGGAATGCCCTCCTTGTCCTGTATCTT-AGCTTTAACGTTGTCAATGGTGTC 902337 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| || || || || | || || ||||| |||||||| Sbjct 902336 GGAGCTCTCGACCTCTAAGGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAAATCTGCAT 902277 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||||| || || || ||| || || ||||||||||| | Sbjct 902048 ACCACCTCTGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGC 901989 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| || | |||||| || ||||| ||||| | |||||| || | || Sbjct 901988 AAGAGTGCGCCCGTCTTCGAGTTGTTTGCCAGCAAAGATCAACCTCTGCTGGTCCGGGGG 901929 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || | || ||| | ||| | ||||| || | Sbjct 901928 AATGCCCTCCTTGTCCTGGATCTT-GGCTTTAACGTTGTCAATCGTGTCAGAACTCTCGA 901870 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || ||||| ||||||||| Sbjct 901869 CTTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTGACAAATATCTGCATA 901820 >seq149 Length=2637241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| | || || |||| |||| ||||||||||| || Sbjct 721951 TCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGGCCGTCCTCCAGCTGTTTTCCGGCGAAG 721892 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | ||||||||||| |||| | |||||| ||||| || ||| | | |||| Sbjct 721891 ATGAGGCGCTGCTGATCCGGCGGGATACCTTCCTTGTCCTGGATCTTC-GCCTTGACATT 721833 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||||| ||||| || | ||||| ||||| || |||| ||||| || Sbjct 721832 GTCGATGGTGTCGGAGCTCTCCACTTCGAGAGTGATTGTTTTTCCGGTTAGGGTTTTCAC 721773 Query 33738 AAAGATCTGCAT 33749 ||||| ||||| Sbjct 721772 GAAGATTTGCAT 721761 >seq582 Length=2128859 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| || || |||||||| |||| ||||||||| |||| || Sbjct 298056 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGACCGTCTTCA 297997 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| || | | |||||| || | || | || || ||||| Sbjct 297996 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGG 297937 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTCCACGTCAACCGTGATCGT 33716 || || || | | | ||| | |||||| ||| |||||| || | ||||| || Sbjct 297936 ATCTTAGCCTTGA-CGTTGTCGATGGTGTC---TGAGCTTTCCACCTCGAGGGTGATGGT 297881 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | ||||| |||||||||||||| Sbjct 297880 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 297848 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| ||||| | | ||||| || ||||| ||| || || |||||||| || | Sbjct 299443 ACCACCCCTCAACCTCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGC 299384 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| |||| || | || |||||||| ||||||| | |||||| ||| | || Sbjct 299383 CAATGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGG 299324 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | || || || || || || || | ||| ||| | |||||| ||| | Sbjct 299323 GATCCCCTCCTTATCCTGGATCTTAGCCTTGA-CATTGTCGATGGTGTCAGAGCTC---T 299268 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| ||||| || || || || || || || ||||||||||||||| Sbjct 299267 CGACCTCAAGGGTGATGGTCTTCCCGGTCAAGGTCTTGACAAAGATCTGCATA 299215 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || |||||||| |||| Sbjct 298303 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 298244 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || |||| || ||||||||||| || | | |||||| || | || Sbjct 298243 CAAAGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAATATAAGTCTCTGCTGGTCCGGGGG 298184 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| |||||| | | |||| || | ||||||| ||||| Sbjct 298183 AATGCCCTCCTTGTCCTGAATTTT-GGCCTTGACATTATCGATGGTGTCGGAGCTTTCCA 298125 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || ||||| || || || | || || ||||||||||||||| Sbjct 298124 CCTCAAGGGTAATCGTCTTTCCGGTGAGGGTCTTCACAAAGATCTGCATA 298075 >seq310 Length=2395884 Score = 89.7 bits (98), Expect = 3e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| ||| ||||| |||| |||| || |||||||| || Sbjct 613349 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAA 613408 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | |||||||| || |||| | ||||| ||||| || || |||| | | Sbjct 613409 GATGAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 613467 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| ||||| || || | || || || || || |||| ||||| | Sbjct 613468 TGTCGATCGTGTCGGAGGATTCTACCTCCAGTGTTATTGTCTTGCCCGTTAGGGTTTTCA 613527 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 613528 CGAAGATCTGCAT 613540 >seq1 Length=4921564 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || ||||| ||| || || ||||||||||| | Sbjct 4756901 CACCACCACGGAGACGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCTG 4756960 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| |||| || | ||||| ||||| || || | | |||||| || | | Sbjct 4756961 CGAGCGTGCGGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGAG 4757020 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| || || || || | | |||| ||| | ||||||| ||||| Sbjct 4757021 GGATGCCTTCCTTATCCTGGATCTT-GGCCTTGACATTGTCGATGGTGTCGGAGGATTCA 4757079 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | |||||| || || || |||| || || || ||||||||||| Sbjct 4757080 ACCTCGAGCGTGATTGTCTTGCCCGTTAGGGTCTTGACGAAGATCTGCAT 4757129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328695138551040