Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq385 210 6e-50 seq1832 102 2e-17 >seq385 Length=2344269 Score = 210 bits (232), Expect = 6e-50 Identities = 239/318 (75%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 29179 ATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTT 29238 ||| | ||||| ||||| || ||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 1147316 ATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 1147375 Query 29239 GTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAA 29297 || || || | | ||| | | || || || ||| | ||| || | ||||||| Sbjct 1147376 GTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAG 1147434 Query 29298 GTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTT 29357 ||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||||| || || Sbjct 1147435 ATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATT 1147494 Query 29358 GATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTG 29417 |||||||||||||||| |||||| ||| ||||| |||| |||||||| ||||| || Sbjct 1147495 GATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCGTTACATTTCTTCCTAGCTGCTTG 1147554 Query 29418 GCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAA 29477 ||| || || || || |||||| |||| || || | || ||||| ||||| || || Sbjct 1147555 GCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTTAACCTAAA 1147614 Query 29478 CGGTTTTAACTTTAACCA 29495 |||||||| || ||||| Sbjct 1147615 TGGTTTTAATTTCAACCA 1147632 >seq1832 Length=4053948 Score = 102 bits (112), Expect = 2e-17 Identities = 206/301 (68%), Gaps = 10/301 (3%) Strand=Plus/Minus Query 28737 ATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCT 28796 |||||||| || || || || || |||||| | || || ||| | | |||| ||| Sbjct 934717 ATTCATTGTTGCTCCTCCGGTAGATATTGATAGTATTCGTGAAAATATTTTTGGATCTCT 934658 Query 28797 TCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGA 28854 || || |||||||| || || || || || | || || | | ||| | |||| Sbjct 934657 ACTTTACGGAAACAATATTATCTCAGGTGCTATTGTTCCTACTTCTGCA--GGTATCG-- 934602 Query 28855 CTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGA 28914 || |||| |||||||| |||||||| | || ||||||||||| | ||||| || || Sbjct 934601 CTGCACTCTTACCCAATATGGGAAGCAACATCCATTGATGAATGGTTATACAATGGTGGT 934542 Query 28915 CCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT---CTATGCTTACATGGGACGC 28971 || | |||| | || | ||||| | |||| || | | |||||||| || Sbjct 934541 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAACTTGTTGTTACATGGTTCGT 934482 Query 28972 GAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCT 29031 |||||||||||||| | || |||| ||| | | |||||| ||| ||||| |||||| Sbjct 934481 GAGTGGGAACTTAG-TTCCGTCTAGATATGCGACATTGGATTGCTGTGGCATATTCAGCT 934423 Query 29032 C 29032 | Sbjct 934422 C 934422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146661747461352