Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2167 120 3e-22 seq310 96.9 3e-15 seq149 84.2 2e-11 seq1098 82.4 7e-11 >seq2167 Length=1051226 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||| ||||| || ||||| | ||||| | ||||| ||| Sbjct 203986 ATGCAAATTTTCGTAAAGACATTGACTGGAAAGACAATCACTTTGGAAGTTGAAAGTTCA 203927 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||||| || ||||| ||||| || || || ||| Sbjct 203926 GACACAATCGACAATGTCAAGGCGAAAATCCAGGACAAAGAAGGTATCCCTCCAGACCAG 203867 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| || | | ||| || || |||||||||| ||||| | |||||| || Sbjct 203866 CAAAGACTGATCTTTGCCGGTAAGCAGCTCGAAGATGGTAGAACACTTGCCGATTATAAC 203807 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| || || || ||||||| ||| | ||||||||||||||| Sbjct 203806 ATTCAAAAGGAGTCGACTCTTCATTTGGTGCTGCGATTGAGAGGAGGAA 203758 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || ||||| | ||||| | || |||||| Sbjct 204442 ATGCAGATTTTTGTTAAGACTTTGACTGGAAAGACAATCACTTTGGAGGTCGAAAGTTCA 204383 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||||| || ||||| || || || || || ||| Sbjct 204382 GACACAATCGACAACGTTAAAGCCAAAATCCAAGACAAAGAAGGGATCCCTCCAGACCAG 204323 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| || | | ||| || ||||| ||||||| ||||| | |||||||| Sbjct 204322 CAAAGACTGATCTTTGCCGGAAAGCAACTTGAAGATGGTAGAACATTGGCGGATTACAAC 204263 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| ||||| || | ||| | ||||| | ||||| || || Sbjct 204262 ATTCAAAAGGAATCAACTCTCCATCTTGTGTTGCGGTTGAGGGGTGG 204216 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || || ||||| || ||||| |||| || | ||||||||| Sbjct 204215 CATGCAAATCTTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTCGAAAGTTC 204156 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| ||||| || ||||| || || || || || || Sbjct 204155 AGACACAATCGACAATGTTAAAGCCAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCA 204096 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||||| || | | || || || |||||||||| |||| | |||||||| Sbjct 204095 GCAAAGACTAATCTTTGCAGGTAAGCAGCTCGAAGATGGCAGAACGCTGGCTGATTACAA 204036 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 |||||| |||||||| || | || | ||| |||| Sbjct 204035 TATTCAGAAAGAATCGACTCTCCACCTTGTGCTAAG 204000 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| ||||| | ||||| || | ||||| | |||||||| ||| | Sbjct 204898 ATGCAGATTTTTGTGAAAACTCTTACCGGGAAGACCATCACTCTTGAAGTCGAGAGCTCA 204839 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || ||| ||| || || || || || || || || || || Sbjct 204838 -GATACGATCGATAATGTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCA 204780 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||||||| | || | | ||||| ||||||||||||| | ||| || |||||||| Sbjct 204779 GCAAAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGTCGAACCCTCGCTGATTACAA 204720 Query 25354 TATTCAAAAAGAATCCAC 25371 ||| || |||||||| || Sbjct 204719 TATCCAGAAAGAATCTAC 204702 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | |||||||| || | ||||| || ||||||| |||| ||||| || | Sbjct 205126 ATGCAGATCTTTGTAAAGACTCTTACCGGCAAGACGATCACTCTCGAGGTCGAGAGTTCA 205067 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || ||| |||||| ||||| || || || || || || || Sbjct 205066 -GATACGATCGACAACGTCAAAGCTAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCA 205008 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | || | | || |||||||||||||||| ||| || |||||||| Sbjct 205007 GCAGAGGTTAATCTTTGCTGGTAAACAACTCGAAGATGGCCGAACCCTCGCAGATTACAA 204948 Query 25354 TATTCAAAAAGAATCCAC 25371 ||| ||||||||||| || Sbjct 204947 TATCCAAAAAGAATCTAC 204930 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || ||||| || ||||| |||| || | ||||| ||| Sbjct 211401 ATGCAGATATTCGTCAAGACATTGACTGGAAAGACGATTACTTTGGAAGTTGAAAGTTCA 211342 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || ||| |||||| || ||||| || || || || |||||| Sbjct 211341 GACACTATCGATAATGTTAAAGCGAAAATTCAGGACAAAGAAGGGATTCCTCCGGATCAG 211282 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | || |||||||||||||||| ||| || ||||||||| Sbjct 211281 CAAAGATTGATCTTTGCTGGGAAACAACTCGAAGATGGGCGAACCCTCGCGGATTACAAT 211222 Query 25355 ATTCAAAAAGAATCCAC 25371 || || ||||| || || Sbjct 211221 ATCCAGAAAGAGTCTAC 211205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||||||||| | ||||| ||| | ||||| | || || ||| Sbjct 204670 ATGCAGATTTTTGTAAAAACTCTTACCGGCAAAACAATCACTTTGGAGGTTGAAAGTTCA 204611 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||||| || || || || || || || || ||| Sbjct 204610 GACACAATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGGATCCCTCCAGACCAG 204551 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || || || ||||| ||||||| | ||| || ||||||||| Sbjct 204550 CAAAGATTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGAACCCTCGCTGATTACAAT 204491 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || |||||||| || | ||| | || ||||| | | || |||| Sbjct 204490 ATCCAGAAAGAATCGACTCTCCATCTTGTCCTAAGACTTCGTGGTGGAA 204442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||||||||| | || || || ||||||| |||| ||||| ||| | Sbjct 211629 ATGCAGATATTTGTAAAAACTCTTACTGGTAAGACGATCACTCTCGAGGTCGAGAGCTCA 211570 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| | || | || || |||||| ||||| || || || || || ||||| Sbjct 211569 -GATACCGTAGACAACGTCAAGTCTAAAATTCAAGATAAGGAAGGAATTCCTCCGGATCA 211511 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || || | | || |||||||||||||| | ||| || |||||||| Sbjct 211510 GCAGAGGCTAATCTTTGCTGGGAAACAACTCGAAGACGGGCGAACCCTCGCGGATTACAA 211451 Query 25354 TATTCAAAAAGAATCCAC 25371 ||| || |||||||| || Sbjct 211450 TATCCAGAAAGAATCTAC 211433 >seq310 Length=2395884 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| ||||| | |||||||| | || || | ||||||||| | Sbjct 1996519 CATGCAAATCTTTGTGAAAACCCTCACCGGAAAGACAATTACCCTTGAAGTCGAAAGCTC 1996578 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || ||||||| ||||| ||||| || || || || || Sbjct 1996579 AGACACCATTGACAATGTCAAGGCAAAAATTCAAGATAAGGAGGGAATTCCTCCAGACCA 1996638 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||| | || | | || || ||||| ||||||| |||| | |||||||| Sbjct 1996639 GCAGAGATTGATATTTGCTGGGAAGCAACTGGAAGATGGCAGAACCCTTGCAGATTACAA 1996698 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || ||||| ||| ||||| | ||| | | ||||| || || Sbjct 1996699 TATCCAGAAGGAATCTACCCTTCATCTCGTGCTGCGTTTGAGGGGGGG 1996746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || || ||||||||| | || || | || || ||| | Sbjct 1996975 CATGCAGATTTTCGTCAAGACTTTGACCGGAAAAACCATTACATTGGAGGTTGAAAGCTC 1997034 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || || ||||||| || || ||||| || || || || || Sbjct 1997035 AGACACCATCGATAACGTGAAGGCAAAAATTCAAGACAAGGAGGGAATTCCTCCAGACCA 1997094 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||| ||| | || | || ||||||||||||||||||| || | || || |||||| Sbjct 1997095 GCAGAGATTGATCTTCGCAGGCAAACAACTCGAAGATGGGAGGACCTTGGCA--GATTAC 1997152 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || || || || ||| ||||| | || || | ||||| || || Sbjct 1997153 AATATCCAGAAGGAGTCGACCCTTCATCTTGTTTTGCGTTTGAGGGGGGG 1997202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || ||||||||||| | || || |||| ||||| | Sbjct 1996064 ATGCAGATATTTGTCAAGACTCTAACCGGAAAAACTATAACTCTCGAGGTCGAGAGTTCC 1996123 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || ||||| || || || || || || || || ||| Sbjct 1996124 GATACAATCGACAATGTCAAGGCTAAAATCCAAGACAAGGAAGGGATTCCCCCTGACCAG 1996183 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || || | || ||||||||||||||||||| |||| | |||||||| Sbjct 1996184 CAAAGGCTAATCTTCGCTGGCAAACAACTCGAAGATGGCAGAACCCTTGCAGATTACAAC 1996243 Query 25355 ATTCAAAAAGAATCCACC 25372 || ||||| || || ||| Sbjct 1996244 ATCCAAAAGGAGTCTACC 1996261 >seq149 Length=2637241 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25168 AAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA 25227 ||| || |||||| | || || ||||| ||||||||||| | ||||| ||||||| || Sbjct 721754 AAAGAAAATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACAATCACTCTCGAAGTGGA 721813 Query 25228 AGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCC 25287 | ||| || ||||| | || || || || || || || ||||| ||||| Sbjct 721814 GAGCTCCGACACCATCGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGTATCCCGCC 721873 Query 25288 CGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGA 25347 |||||||| | ||||| | || ||| ||||| || || || | | | | ||| Sbjct 721874 GGATCAGCAGCGCCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCCGGACCTTAGCCGA 721933 Query 25348 TTACAATATTCAAAAAGAATCCAC 25371 ||||| ||||| || |||||||| Sbjct 721934 CTACAACATTCAGAAGGAATCCAC 721957 >seq1098 Length=1756062 Score = 82.4 bits (90), Expect = 7e-11 Identities = 106/145 (73%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || ||||| || ||||| || || ||||| || || || | | || ||||| | ||| Sbjct 778295 GACAAAGAAGGAATACCTCCTGACCAGCAGAGGCTGATATTTGCTGGTAAACAGTTAGAA 778354 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| |||| | | ||||||||||| ||||||||||| ||| |||| | || || Sbjct 778355 GATGGCAGAACTTTGGCAGATTACAATATCCAAAAAGAATCGACCCTTCACCTCGTTTTG 778414 Query 25388 AGATTGAGAGGAGGAA-AATGATCA 25411 || |||| || |||| |||||||| Sbjct 778415 AGGCTGAGGGGTGGAACAATGATCA 778439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445082093139840