Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq504 295 1e-73 seq20 264 2e-64 seq669 91.5 2e-12 seq273 89.7 7e-12 >seq504 Length=2204878 Score = 295 bits (326), Expect = 1e-73 Identities = 423/586 (72%), Gaps = 15/586 (3%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| ||||||| ||| ||||||| || | || | || ||||| |||||| | Sbjct 1298149 AACCCCGACCGCTTCTGTA-TGTTCCCGATTCAGTATCCTGAAATCTGGGAGATGTACAA 1298091 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC 1455852 |||| || || ||||||| |||||||||||||| ||||| | || |||| || Sbjct 1298090 GAAAGCCCAAG-CCTCCTTCTGGACCGCCGAGGAAGTCGATTTGTCCGACGACCTCCGCC 1298032 Query 1455853 ACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTC 1455912 ||||||| | || | || ||||| ||||||||||| |||||||||||||| || | Sbjct 1298031 ACTGGGTAACCCTCTCCTCCGGCGAGCAGCATTTCATCAAACACGTCCTCGCCTTCTT-C 1297973 Query 1455913 GCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAA 1455972 |||||| ||| |||||||| ||||| || ||||| || || ||||| || ||||| Sbjct 1297972 GCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGTTTCATGAAGGACGTCCAG 1297913 Query 1455973 TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAA 1456032 | ||||||| || || ||||| ||||| ||||||||||| ||||||||||| || Sbjct 1297912 ATCTCAGAGGCCCGCGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAG 1297853 Query 1456033 ACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTT 1456092 | ||| ||||| |||| | ||| |||||||| || |||||| |||||||||| Sbjct 1297852 ATGTACAGTCTCCTCCTCGAGGCTTACATCAAGGACTCGTCGGAGAAGAACCACCTCTTC 1297793 Query 1456093 CGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC 1456152 ||||| ||||| || || || | || ||| |||||| | |||||| | ||||| Sbjct 1297792 CGCGCAATCGAAACTGTCCCCTGCGTCCAGAAGAAGGCCAATTGGGCGCTCCGCTGGAT- 1297734 Query 1456153 AACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGC 1456210 || ||| ||| | || || ||||| | |||| ||| ||| |||| ||||| Sbjct 1297733 -----TGACGGCTCCGAATCATTCGCAGAGCGAATTGTCGCCTTCGCCTGCGTGGAGGGA 1297679 Query 1456211 ATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 || || ||||| || || |||||||||||||| ||||| |||||||| || || ||||| Sbjct 1297678 ATATTCTTCTCCGGAAGCTTCTGCGCCATCTTCTGGCTGAAGAAGCGGGGGCTGATGCCG 1297619 Query 1456271 GGTCTTCTGCTTTAGC-AACGAATTTATCAGTCGCGACGAAGTTTT 1456315 || | |||| | ||||| || || ||||||||| | ||| Sbjct 1297618 GG--GTTGACTTTCTCGAACGAGTTAATTTCTCGCGACGAGGGTTT 1297575 >seq20 Length=956477 Score = 264 bits (292), Expect = 2e-64 Identities = 386/541 (71%), Gaps = 10/541 (2%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 |||| | |||| || | |||| || || | |||| | || ||||| |||||| || Sbjct 871338 AACCAGGACCGATTCTGCATGTTTCCAATTCAATACCCACAAATTTGGGAGATGTAC-AA 871280 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 ||||||||| |||||||| |||||||||||||| ||||| | | ||| ||| Sbjct 871279 AAAGGCCGAAGCCTCCTTCTGGACCGCCGAGGAAGTCGATTTGTCCCAGGACCTCCGCCA 871220 Query 1455854 CTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 ||||| | || | ||||||| ||||||||||| ||||| || ||||| || || Sbjct 871219 CTGGGAAACCCTATCCACCGACGAGAAGCATTTCATCAAACACGTTCTGGCCTTCTT-CG 871161 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 ||||| ||| |||||||| || ||||| ||||| ||||| ||||| ||||| || Sbjct 871160 CCGCCTCCGACGGCATCGTCCTGGAAAACCTAGCCGGACGCTTCATGAAGGAGGTGCAGA 871101 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 | | || || || || ||||| ||||||||||| ||||||||||| ||||| || | Sbjct 871100 TCTCGGAAGCCCGCGCCTTCTACGGTTTCCAGATCGCAATCGAAAACATACACTCCGAGA 871041 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTC 1456093 ||| ||||| |||| ||||| | ||||| | | ||||||| || ||||| | Sbjct 871040 TGTACAGCCTCCTCCTCGAATCCTACATAAAGGATTCCGACGAGAAGAACAGGCTCTTCC 870981 Query 1456094 GCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCA 1456153 |||| ||||| || || || | ||| || |||||| | ||||| | |||||| Sbjct 870980 GCGCAATCGAGACCGTCCCCTGCGTGGAGAGGAAGGCCAATTGGGCACTCCGCTGGATC- 870922 Query 1456154 ACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCA 1456211 || ||| ||| ||| ||||||||| | ||| || ||| |||| || || | Sbjct 870921 -----GACGGCGGCGAGTGTTTCGCCGAGCGGATAATCGCGTTCGCCTGCGTGGAAGGGA 870867 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCG 1456271 | || ||||| || || ||||||||||| || ||||| ||||||||||| || ||||| | Sbjct 870866 TATTCTTCTCCGGAAGCTTCTGCGCCATATTCTGGCTGAAGAAGCGCGGTCTGATGCCGG 870807 Query 1456272 G 1456272 | Sbjct 870806 G 870806 >seq669 Length=278079 Score = 91.5 bits (100), Expect = 2e-12 Identities = 167/235 (71%), Gaps = 16/235 (7%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||| |||||||||||||| ||||| || | | ||| ||| || | |||| || Sbjct 223593 ATCTTCAAAGTGCTCAAGCAGGTCCACCCA-GA--CATCGGG--ATC-TCGAGCAAGGCC 223540 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC-GGCACCGAGGCCGG 725029 ||| ||| |||||| || ||||||| || |||| | | | ||| | | ||| Sbjct 223539 ATGGGGATAATGAACAGCTTCATCAACGATATTTTCGA--GAAGCTGGCTCAGGAATCGG 223482 Query 725030 -TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCG 725085 ||| ||||| || | ||||||| || ||| | ||| |||||||||||||||| Sbjct 223481 CTCGGCTGGCTCGGTACAACAAG---AAGCCGACCATCACTTCTCGCGAGATCCAGACCG 223425 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||| | ||| |||||| |||||| |||||||| || || || || Sbjct 223424 CCGTGAGGCTGGTGTTGCCCGGCGAGTTGGCCAAACACGCCGTTTCGGAAGGAAC 223370 >seq273 Length=2571979 Score = 89.7 bits (98), Expect = 7e-12 Identities = 161/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||||| |||||||| ||||| || | | ||| ||| || | |||| ||||| Sbjct 1288722 CAAGGTGCTGAAGCAGGTCCACCCA-GA--CATCGGG--ATC-TCGAGCAAGGCCATGGG 1288669 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCG-AGGCCGGTCGCC 725034 ||||||||| || |||||||||| |||| || ||| | | |||| | || | Sbjct 1288668 AATCATGAACAGCTTCATCAACGACATCTTCGAGAA-ATTGGCCCAGGAGGCGGCGCGTC 1288610 Query 725035 TGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCC 725094 |||| | | ||||||| ||| ||| | || ||||||||||||||||| || Sbjct 1288609 TGGCTAGGTACAACAAGAAGCCCACCATCACTTCCCGGGAGATCCAGACCGCCGTCCGAT 1288550 Query 725095 TGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | | | |||||| |||||| ||||||||| || || || |||| Sbjct 1288549 TGGTGCTTCCCGGCGAGTTGGCCAAGCACGCCGTTTCTGAAGGTACCA 1288502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177597848534344