Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1832 246 3e-60 seq385 201 1e-46 seq513 143 3e-29 seq617 82.4 9e-11 >seq1832 Length=4053948 Score = 246 bits (272), Expect = 3e-60 Identities = 310/423 (73%), Gaps = 2/423 (0%) Strand=Plus/Plus Query 161904 CATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCA 161962 |||||| || || || || ||||||||||| || ||||| ||||| || ||| || Sbjct 906937 CATTCT-TTATTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCA 906995 Query 161963 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCAT 162022 | | || || || |||| |||||| || || |||||||| |||| ||||| || ||||| Sbjct 906996 ATTAGGTGGTCTGTGGACTTTTGTTGCTCTGCATGGTGCGTTCGGACTAATAGGTTTCAT 907055 Query 162023 GCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTT 162082 | | ||||| ||||| || || || | || | || || || ||||| || || || Sbjct 907056 GTTACGTCAATTTGAGCTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATT 907115 Query 162083 CTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAG 162142 |||||||| |||| ||||||||| || ||||| || || ||| | || ||||| | Sbjct 907116 TTCTGGTCCAATTGTTGTTTTTGTTTATGTATTCCTGATTTATCCACTAGGCCAGTCTGG 907175 Query 162143 TTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCA 162202 |||||| || || | ||||| || ||||| || ||| ||||| | | ||| |||| Sbjct 907176 TTGGTTCTTTGCACTTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCA 907235 Query 162203 AGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 162262 |||||| ||||| ||||| |||||||| || ||||||||||||||||| ||| || | || Sbjct 907236 AGGATTTCATAATTGGACGCTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGG 907295 Query 162263 TGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGG 162322 | || | |||| |||||||| || | || || |||||||| |||| || ||||| Sbjct 907296 GGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGG 907355 Query 162323 AGA 162325 || Sbjct 907356 TGA 907358 Score = 244 bits (270), Expect = 1e-59 Identities = 327/452 (72%), Gaps = 2/452 (0%) Strand=Plus/Plus Query 161875 CAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAG 161933 ||||| |||||| ||| | | | | |||||| || || || || ||||||||||| Sbjct 887153 CAGTTTCCACTCCTGCTAATAGTTTAGCGCATTCT-TTATTGTTACTATGGGGTCCTGAA 887211 Query 161934 GCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTC 161993 || ||||| ||||| || ||| ||| | || || || |||| |||||| || || Sbjct 887212 GCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTG 887271 Query 161994 CATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATT 162053 |||||||| |||| ||||| || |||||| | ||||| ||||| || || || | || Sbjct 887272 CATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGATCTGTT 887331 Query 162054 GGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTC 162113 | || || || ||||| || || || |||||||| |||| ||||||||| || Sbjct 887332 CAATTGCGACCTTATAATGCAATCGCATTTTCTGGTCCAATTGTTGTTTTTGTTTATGTA 887391 Query 162114 TTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCA 162173 ||||| || || ||| | || ||||| ||||||| || || || ||||| | ||| Sbjct 887392 TTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCA 887451 Query 162174 GCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTC 162233 || || ||| ||||| | | ||| |||||||||| ||||| ||||| ||||||| || Sbjct 887452 GCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAACCCATTT 887511 Query 162234 CATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTC 162293 ||||||||||||||||| ||| || | || | || | |||| |||||||| || | Sbjct 887512 CATATGATGGGAGTTGCCGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCT 887571 Query 162294 ACAGTTGAAAATACATTATACGAGGATGGAGA 162325 || || |||||||| |||| || ||||| || Sbjct 887572 ACCGTAGAAAATACTTTATTTGAAGATGGTGA 887603 >seq385 Length=2344269 Score = 201 bits (222), Expect = 1e-46 Identities = 237/318 (75%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 160506 ATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTC 160565 ||| | ||||| ||||| |||||||| || || | ||| ||||||||| || | Sbjct 1147316 ATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 1147375 Query 160566 GTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAA 160624 || ||||| | | | || | ||||| || |||| || || || | ||||| | Sbjct 1147376 GTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAG 1147434 Query 160625 GTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTT 160684 || |||||||||||||| || || || || || || || |||||||| || || || || Sbjct 1147435 ATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATT 1147494 Query 160685 GATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATG 160744 ||||||||||||||| |||||||| || ||||| | || |||||||| || || || Sbjct 1147495 GATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCGTTACATTTCTTCCTAGCTGCTTG 1147554 Query 160745 GCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAA 160804 ||||||||| || ||||||||||||||| | ||| | ||||| ||||| || ||||| || Sbjct 1147555 GCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTTAACCTAAA 1147614 Query 160805 CGGTTTCAACTTCAACCA 160822 ||||| || |||||||| Sbjct 1147615 TGGTTTTAATTTCAACCA 1147632 >seq513 Length=378260 Score = 143 bits (158), Expect = 3e-29 Identities = 213/298 (71%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 161862 TTTCTTA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-C 161919 ||||||| | || ||||| ||||| ||| | | | | |||||| || || || | Sbjct 131836 TTTCTTAACGGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTATTGTTAC 131778 Query 161920 TCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGA 161979 | ||||||||||| || ||||||||||| || ||| ||| | || || || |||| Sbjct 131777 TATGGGGTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGA 131718 Query 161980 ATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAAC 162039 |||||| || || |||||||| |||| ||||| || |||||| | ||||| ||||| | Sbjct 131717 CTTTTGTTGCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAGC 131658 Query 162040 TGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 162099 | || || | || | || || || |||| || || || |||||||| ||||||| Sbjct 131657 TTGCTCGATCTGTTCAATTGCGACCTTATGATGCAATCGCATTTTCTGGTCCAATTGCTG 131598 Query 162100 TTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCC 162157 ||||||| || ||||| || || ||| | || ||||| ||||||| || || || Sbjct 131597 TTTTTGTTTCTGTATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACC 131540 >seq617 Length=2014290 Score = 82.4 bits (90), Expect = 9e-11 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| |||||||||||||| |||||||| || Sbjct 804339 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGCTGGTCCGGC 804398 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 | | || |||| ||| ||| | || | || ||||| | || | ||||| || Sbjct 804399 CCATTGCTCTTTCCTTGTGCCTATTTCTCTTTAGGGAGTTGGTTCACATGTACAACCTTT 804458 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 161866 | ||| ||||||||||| || | || | ||||||| | | ||| || || ||||| Sbjct 804459 GTAACTTCATGGTATACCCACGGATTGGCCAATTCCTATTTGGAAGGCTGTAA--TTTCT 804516 Query 161867 T-ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGG 161924 | || || || || ||||| ||| | | | | |||||| || || || || ||| Sbjct 804517 TAACGGCCGCAATTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTATTGTTACTATGG 804575 Query 161925 GGTCCTGAGGCTCAAGG 161941 |||||||| || ||||| Sbjct 804576 GGTCCTGAAGCACAAGG 804592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559488529714400