Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1991 120 4e-22 seq848 105 9e-18 >seq1991 Length=3980371 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || |||||||| | ||| | || |||| || |||||| |||||||||| ||| || Sbjct 851767 CCACCCTGATCCACGTACCGAGCGGTGTCGTTGAAGACTCGAAGCATCGGAACAATGCCG 851826 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||| ||| ||||||||||| | || || || ||| |||||| Sbjct 851827 TTGGATGTTCCATTTGTCCCACGTATATAACTTCCAGTAGCACGTATGTTATGAATAGAC 851886 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || |||||||| ||| |||| ||| || ||||| || || ||||| Sbjct 851887 AAACCGATGCCTCCTGCTGATTTGCTAATTACAGCGCACTCCTTCAACGTATCGTATATT 851946 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||| ||| |||| | |||||| || || Sbjct 851947 CCCTCAATGCTATCCTCTTTCATACATATAAGAAAGCAACT 851987 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 69503 GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTG 69562 ||||||| ||| ||| ||||| | |||||| |||| | || |||||| | ||||| | Sbjct 851157 GTGTATAAAGC--TTCAAATTCCGCACCCCAACAATCAGCTAAACCAGGAGACTCATTAG 851214 Query 69563 GACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCC 69622 |||| | || |||||| ||| | || ||||| ||||||||||||||| || | || Sbjct 851215 GACAAAACAGTGACCATTTTGCATTAGACTGAACTCTTTTCATAAATAGATCAGGTACCC 851274 Query 69623 AAAGAGCTATAAAGAGATCTCTGG 69646 | || || | ||| | |||||||| Sbjct 851275 ATAGTGCAAAAAACAAATCTCTGG 851298 Score = 84.2 bits (92), Expect = 3e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 68912 AAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTC 68971 |||||||| |||| |||| | | || ||| || |||| | |||||||||||||| | Sbjct 850056 AAAGATCG-ATTG-AGAAATACCTTGCTTACAGGACTTCCACTGTATGTTTCATAAGGGC 850113 Query 68972 CTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAA 69031 | || | || ||||||||||||| ||||| ||||||| ||| || || || ||||| | Sbjct 850114 CGTCTTTTTGAGCTAGTTCACAAGATGCCTTTAATGCATGGTAGTATATAGTCTCGAATA 850173 Query 69032 TCTTCTTATT 69041 | | ||| || Sbjct 850174 TATCCTTGTT 850183 >seq848 Length=4381129 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | || |||| ||| |||||| |||||||||| || || Sbjct 3843652 CCCCCTTGATCAACATACCGAGCGGTGTCATTGAAGACTCGAAGCATCGGAACGATGCCG 3843711 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || |||| ||||||||||| ||||||||||| | || || || ||| | ||| Sbjct 3843712 TTGGATTGTCCATTTGTTCCGCGTATATAACTTCCAGTCGCACGGATGTTATGCACAGAC 3843771 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || || || || ||| ||||| ||| || |||||||| || ||||| Sbjct 3843772 ACACCAATACCACCAGCTGATTTGCTGATTACAGCGCACTCCTTCAATGTATCGTATATG 3843831 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| |||||||| ||| ||||| | ||||| ||||| Sbjct 3843832 CCCTCAATGCTATCCTCTTTCATGCATACGAGAAAGCAGCT 3843872 Score = 89.7 bits (98), Expect = 7e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| |||||||| | || |||||||| |||||||||||| || ||| | ||||| | Sbjct 3844255 GTTCCAGCATTAAAAAGAGTCGGAGATGCATGAGTGAACCATCGTTGAGACAACAGATGG 3844314 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| ||| ||| || ||||| | || || || | | || | ||| ||| Sbjct 3844315 TACGTTTTTATAACTGCGTCGATATCATCTTTGTGTATACCAACAGAAACTCTCATTAAC 3844374 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || |||||||| | ||| || || | | || | ||||| || |||| || Sbjct 3844375 ATGTGCTGAGGCCTTTCAACAACCTTCCCTTGGACCTTTAGGAGGTAAGACCTTTCGAGC 3844434 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| | | |||| ||||||||| || || || || Sbjct 3844435 GTTTTGAAACCAAAGAAATCGTATTCAAAGTCTCTGTCATATATTAT 3844481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686889806971680