Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq582 107 2e-18 seq149 107 2e-18 seq2135 93.3 4e-14 seq1 87.8 2e-12 >seq582 Length=2128859 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||| | |||| ||||||| Sbjct 298056 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGACCGTCTTCA 297997 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 |||||||| ||||| | ||||| | ||| || ||||| || | ||||| || || | Sbjct 297996 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGG 297937 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | | || | ||||||| | ||| || || || || || | |||| Sbjct 297936 ATCTTAGCCTTGACGTTGTCGATGGTGTCTGAGCTTTCCACCTCGAGGGTGATGGTTTTG 297877 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||||||||||||||| ||||| Sbjct 297876 CCGGTGAGAGTTTTCACAAAGATCTGCAT 297848 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | ||||| || | || || || ||||| || ||||||||| Sbjct 290932 TGCCACCACGCAGACGGAGGACCAAGTGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGG 290873 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | || ||||||||||| ||||| | ||||| | || || ||||| | Sbjct 290872 CGAGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCAAAGATGAGCCTTTGCTGGTCCGGGG 290813 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| ||| ||| || | | | || | ||||| | | ||| | Sbjct 290812 GAATTCCTTCCTTATCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTTTCCA 290753 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || |||||||| ||||||||||| Sbjct 290752 CCTCAAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATTTGCAT 290704 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||||| || ||||| || | || || || || || || |||||||| || Sbjct 292070 CCACCCCTCAACCTCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCC 292011 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| ||| ||||||||||||| || |||||| |||| || | ||| || || || || Sbjct 292010 AATGT-GCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGG 291952 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| |||||| |||| | | || | ||||| | | || || Sbjct 291951 GATCCCCTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTGTCAGAGCTCTCGAC 291892 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || || || || || || ||||| |||||| Sbjct 291891 CTCGAGGGTGATGGTCTTTCCGGTTAGGGTCTTGACGAAGATCTGCATA 291843 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||||| || ||||| || | || || || || || || |||||||| || Sbjct 299442 CCACCCCTCAACCTCAGAACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCC 299383 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| ||| ||||||||||||| || |||||| |||| || | ||| || || || || Sbjct 299382 AATGT-GCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAATCAGCCTCTGCTGGTCTGGTGG 299324 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| |||||| || | | || | ||||| | | || || Sbjct 299323 GATCCCCTCCTTATCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAGCTCTCGAC 299264 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || |||| || || |||||||| |||||| Sbjct 299263 CTCAAGGGTGATGGTCTTCCCGGTCAAGGTCTTGACAAAGATCTGCATA 299215 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || || || ||||||||| || |||| |||||||| Sbjct 291824 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGGCCGTCTTCG 291765 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | || || | ||| || || || || | ||||| || || | Sbjct 291764 AGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGG 291705 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | ||||| | | || || || || || || | || Sbjct 291704 ATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTT 291645 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || ||||| |||||| Sbjct 291644 CCGGTAAGGGTCTTGACGAAGATCTGCATA 291615 >seq149 Length=2637241 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||||||| | | | || |||| || |||||||| ||| Sbjct 721957 GTGGATTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGGCCGTCCTCCAGCTGTTTTCCG 721898 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| ||||||||||| | ||| || || || |||||| || Sbjct 721897 GCGAAGATGAGGCGCTGCTGATCCGGCGGGATACCTTCCTTGTCCTGGATCTTCGCCTTG 721838 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || ||||| ||||| || | ||| || || || ||| Sbjct 721837 ACATTGTCGATGGTGTCGGAGCTCTCCACTTCGAGAGTGATTGTTTTTCCGGTTAGGGTT 721778 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 721777 TTCACGAAGATTTGCAT 721761 >seq2135 Length=1067647 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||| ||||| ||| | ||||| |||||||| Sbjct 901801 ACCAAGTGGAGGGTAGACTCCTTTTGAATGTTGTAATCGGCAAGAGTGCGCCCGTCTTCG 901742 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || ||||| || || | || | | || || ||||| || | || || || || | Sbjct 901741 AGTTGTTTGCCAGCAAAGATCAACCTTTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGG 901682 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| |||| | | || | ||||| | | ||| || || || || || | || Sbjct 901681 ATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGCTTTCCACCTCGAGGGTGATGGTCTTT 901622 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||||||||||||| ||||| Sbjct 901621 CCGGTCAGGGTTTTCACAAAGATCTGCAT 901593 >seq1 Length=4921564 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 27085 TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACAC 27144 |||| |||| ||||||||||| |||||| | ||||| | ||| || ||||| || | | Sbjct 4756967 TGCGGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGGATGC 4757026 Query 27145 CCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTA 27204 | || ||||| ||||||| || | | || | ||||| | || |||||| || | Sbjct 4757027 CTTCCTTATCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGATTCAACCTCGA 4757086 Query 27205 GAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | |||||||| || || || || ||||| ||||| Sbjct 4757087 GCGTGATTGTCTTGCCCGTTAGGGTCTTGACGAAGATCTGCAT 4757129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424922944299744