Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq370 100 4e-16 seq504 95.1 2e-14 seq2203 91.5 2e-13 seq422 86.0 8e-12 >seq370 Length=494299 Score = 100 bits (110), Expect = 4e-16 Identities = 222/333 (67%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| ||||| | || ||||| || ||||| || | ||| || || | ||||| Sbjct 303544 ATCAAGAATATCGGCTCGGTTAGTAGCTGCAATTACAATAATACCCGTGTTCCCTTCAAA 303603 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||||||| || | | || || | || || || || || || ||| | Sbjct 303604 GCCATCCATCTCAGTTAAGAGCTGGTTCAACGTCTGCTCCCTTTCGTCGTTTCCACCACC 303663 Query 11602 ACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG 11661 | ||||| | | ||| | ||||| |||||||| ||||| | || |||||||| || Sbjct 303664 AATACCAGTCCCTCTCTGCCTCCCCACAGCATCAATTTCATCCACAAACACAATACAAGG 303723 Query 11662 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAA 11721 ||| || || | | || ||||| |||||||| ||||| || || ||||| Sbjct 303724 AGCATTCTCCTTTGCCTTCTTGAAAAGATCACGAACCCTCGAAGCACCGACTCCGACAAA 303783 Query 11722 CATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGAT 11781 |||||| ||||| | | | || | || || || ||| | ||| ||||| || Sbjct 303784 CATCTCAACAAACTCCGAACCGGAAATCGAGAAAAACGGAACACCAGCTTCGCCCGCAAT 303843 Query 11782 GGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || | ||||||||||| |||||||| Sbjct 303844 AGCTTTAGCCAAAAGGGTCTTTCCGGTACCTGG 303876 >seq504 Length=2204878 Score = 95.1 bits (104), Expect = 2e-14 Identities = 178/261 (68%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| | |||||| || || ||||| | || || ||||| | || ||||| || || Sbjct 1297571 GTGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGAAAGTCAACCCCGGCATCAGCCC 1297630 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||||| ||| | || |||||||| ||||||||||| || |||||||| || Sbjct 1297631 CCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAATATTCCCTCCACGCA 1297690 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | || || || ||||| || || | |||| ||| | || Sbjct 1297691 GGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGA---GCCGTCAATCCAGCGGAGCGC 1297747 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 122909 ||| || |||||||||| | || || ||||||| ||| || || | || ||||| Sbjct 1297748 CCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCGATTGCGCGGAAGAGGTGGTTCTT 1297807 Query 122910 TTCAGATCCATCCTTAATGTA 122930 || || ||||| ||||| Sbjct 1297808 CTCCGACGAGTCCTTGATGTA 1297828 >seq2203 Length=1028949 Score = 91.5 bits (100), Expect = 2e-13 Identities = 216/320 (68%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG- 11597 ||| || ||||| || || | | |||||||| || || |||||||||||||| || Sbjct 668709 AAACCCGTCCATTTCAGTCAAGAGCTGATTAATCGTCTGCTCTCTCTCATCATTCCCTCC 668768 Query 11598 GCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 || | | || || | | ||| | ||||| ||||||||||||||||| || ||||| | Sbjct 668769 GCCCATC-CCGGCCCCTCTCTGCCTCCCCACAGCATCAATCTCATCAATAAACACAATGC 668827 Query 11658 ATGGTTGATTTTCGC--GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 | || |||||| || | || || ||||| | || || || || ||||| Sbjct 668828 AAGG--AGCTTTCGCCTTTGCCTTCTCGAACAGATCCCTCACTCTCGAAGCTCCAACACC 668885 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGG--ATGAATGGGACATTTGATTCA 11773 ||||| | ||||||||| || || | |||| || | ||| || ||| | ||| Sbjct 668886 TACAAAAAGCTCCACAAA--TTCCGACGCCGCACAGGAAAAGAACGGTACACCAGCTTCG 668943 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || | | || | || |||||||| ||||| ||||| || ||| | || ||| | Sbjct 668944 CCGGAAACCGCCCTCGCCAGGAGGGTTTTTCCTGTACCAGGTGGGCCCACCAGGAGGCAG 669003 Query 11834 CCTCGGGGGATCTTGGCACC 11853 ||| |||||||| || || Sbjct 669004 CCTTTCGGGATCTTCGCGCC 669023 >seq422 Length=4557820 Score = 86.0 bits (94), Expect = 8e-12 Identities = 208/315 (66%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | |||||||| || || |||| |||||||| | Sbjct 4441801 AAACCCATCCATTTCAGTCAAGAGCTGATTAATCGTCTGCTCTCGTTCATCATTCCCACC 4441742 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | ||| || | | ||| | ||||| |||||||||||||||||||| ||||| || Sbjct 4441741 CCCCATACCCGCCCCCCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATGCA 4441682 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || || | ||| | || || | ||| | ||||| ||||| |||||||| Sbjct 4441681 AGGCGCCTTCGCCTTGGCCTTCTCGAACAAATCCCTCACCCTAGAAGCACCTACACCAAC 4441622 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||| | ||| ||||| | | || |||||| || || || || | ||||| || Sbjct 4441621 AAAAAGCTCAACAAATTCCGAAGCGGAGCACGAGAAAAACGGCACCCCAGCCTCACCAGC 4441562 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCG 11838 | || | ||| | || ||||| || || || ||| ||| | |||||| || Sbjct 4441561 CACCGCCCTGGCCAACAGCGTCTTCCCGGTTCCCGGCGGGCCCACCAGAAGGCATCCCTT 4441502 Query 11839 GGGGATCTTGGCACC 11853 || ||||| ||||| Sbjct 4441501 CGGAATCTTCGCACC 4441487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628014634915200