Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq504 111 2e-19 seq370 95.1 1e-14 seq422 87.8 2e-12 >seq504 Length=2204878 Score = 111 bits (122), Expect = 2e-19 Identities = 368/564 (65%), Gaps = 9/564 (2%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || ||||||| |||||| ||||||||||| || || | |||||| || |||||| Sbjct 1297271 ATATTCTCCAACCCTCTTCTCAAAGAAGTTTGTTTTACCTTGCAAGCTAATCAGCTCCAT 1297330 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 |||||||||| |||| || | || | | || ||||| || || | | Sbjct 1297331 CCAATCAAATGGATTCTGCACATTGTACATCTTCCCACATCCCAATGCATTC-AGCAATC 1297389 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 ||| | || | |||||||||| |||| | || |||||| || | | | Sbjct 1297390 TATCTGCTACAAATTCAATGTACTGGCTCATCATTTCTCCGTTCATCCCCACCAACGCGC 1297449 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || |||||||| | | ||| || | || || ||||| || | | ||| || | | Sbjct 1297450 ACGGCAGCGCGTCACACACAAACTCCCTTTCTATTTCCACCGCGTTCGCCACTATCCCCT 1297509 Query 129966 GAATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAACTC 130023 | ||||| || ||| | || | || || | | || |||| ||| || Sbjct 1297510 TCACTTTCTCCTCGCTCAGCTTCATCTTCAACAGACT-GTACAGCAGGCACGCGAAA-TC 1297567 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| | ||||||||| || || || | || |||||||| || || ||||| || Sbjct 1297568 GCAGTGCAAACCCTCGTCGCGAGAAATTAACTCGTTCGAGAAAGTCAACCCCGGCATCAG 1297627 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||||||||||||| |||||| || || || || || |||||||| || |||||||| Sbjct 1297628 CCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAATATTCCCTCCAC 1297687 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 || ||||| || | | ||||| || || || ||| |||| ||| | Sbjct 1297688 GCAGGCGAAGGCGACAATTCGCTCTGCGAATGATTCGGA---GCCGTCAATCCAGCGGAG 1297744 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 |||||| | ||||| |||| || || ||||| || | ||| || ||||| | || Sbjct 1297745 CGCCCAATTGGCCTTCTTCTGGACGCAGGGGACAGTTTCGATTGCGCGGAAGAGGTGGTT 1297804 Query 130264 CTTTTCTGATGGATCTTTGATGTA 130287 ||| || || | || |||||||| Sbjct 1297805 CTTCTCCGACGAGTCCTTGATGTA 1297828 >seq370 Length=494299 Score = 95.1 bits (104), Expect = 1e-14 Identities = 227/337 (67%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 ||||| ||||| ||||| || || || || |||| || ||||| | |||||| Sbjct 303545 TCAAGAATATCGGCTCGGTTAGTAGCTGCAATTACAATAATACCCGTGTTCCCTTCAAAG 303604 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT---CGCAGGC 14212 |||||||||||||| ||||| || || | || || || | ||| || || || Sbjct 303605 CCATCCATCTCAGTTAAGAGCTGGTTCAACGTCTGCTCCCTTTCGTCGTTTCCACCACCA 303664 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 |||||| | | || ||| | || || || ||||||||||| | || || ||||| Sbjct 303665 ATACCAGTCCCTCT---CTGCCTCCCCACAGCATCAATTTCATCCACAAACACAATACAA 303721 Query 14273 GGTTGATT-TTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 || ||| | | | | ||| ||| | ||| || || ||| |||||||| || || Sbjct 303722 GGAGCATTCTCCTTTGCCTTCTTGAAA-AGATCACGAACCCTCGAAGCACCGACTCCGAC 303780 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCG 14390 ||||||||| ||||| | | ||||| || | || || || || || ||| |||| Sbjct 303781 AAACATCTCAACAAACTCCGAACCGGAA-ATCGAGAAAAACGGAACACCAGCTTCGCCCG 303839 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | || ||| || | |||||||| || || ||||| Sbjct 303840 CAATAGCTTTAGCCAAAAGGGTCTTTCCGGTACCTGG 303876 >seq422 Length=4557820 Score = 87.8 bits (96), Expect = 2e-12 Identities = 185/276 (67%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| |||||||| ||||||||||| ||||| || || || || |||||||||||| || Sbjct 4441801 AAACCCATCCATTTCAGTCAAGAGCTGATTAATCGTCTGCTCTCGTTCATCATTCCCACC 4441742 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | |||||| | | ||| | || || || ||||| ||||| ||||| || || || Sbjct 4441741 CCCCATACCCGCCCCCCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACAATGCA 4441682 Query 14272 TGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 || || | ||| || || | ||| | ||| || ||||| ||||| || Sbjct 4441681 AGGCGCCTTCGCCTTGGCCTTCTCGAACAAATCCCTCACCCTAGAAGCACCTACACCAAC 4441622 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 ||| | ||| ||||| | | ||||| || || || || || || ||||| || Sbjct 4441621 AAAAAGCTCAACAAATTCCGAAGCGGAGCACGAGAAAAACGGCACCCCAGCCTCACCAGC 4441562 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | || | ||| | || |||||||| || || || Sbjct 4441561 CACCGCCCTGGCCAACAGCGTCTTCCCGGTTCCCGG 4441526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618418100266720