Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq504 165 9e-36 seq20 141 1e-28 seq10 84.2 2e-11 >seq504 Length=2204878 Score = 165 bits (182), Expect = 9e-36 Identities = 376/556 (68%), Gaps = 10/556 (2%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || | ||| || || | |||| |||| |||||||| | || |||||| Sbjct 1298128 TTCCCGATTCAGTATCCTGAAATCTGGGAGATGTACAAGAAAGCCCAAGCCTCCTTCTGG 1298069 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 ||| |||||| | || | ||| ||||| | |||| | ||| | || | Sbjct 1298068 ACCGCCGAGGAAGTCGATTTGTCCGACGACCTCCGCCACTGGGTAACCCTCTCCTCCGGC 1298009 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 ||||||||||||||||| ||||| ||||||||||| || || || || || || Sbjct 1298008 GAGCAGCATTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTTTG 1297949 Query 59742 GAAAATATAGACATGAACTTTTC--CAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCT 59799 || ||| | | | | || |||| ||||| |||||||| | |||||||| | |||| Sbjct 1297948 GAGAATCTCGCC--GGACGTTTCATGAAGGACGTCCAGATCTCAGAGGCCCGCGCCTTCT 1297891 Query 59800 AC-GCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGAT 59858 || || | | ||| || |||| ||||||||||||| |||| ||| | |||| Sbjct 1297890 ACGGCTTCCAAATCG-CCATCGAGAACATCCACTCCGAGATGTACAGTCTCCTCCTCGAG 1297832 Query 59859 AAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCCC 59917 | ||||||| || |||||| || ||||| || || || || |||||| Sbjct 1297831 GCTTACATCAAGGACTCGTCGGAGAAGAACCACCTCTTCCGCGCAATCGAAACTGTCCCC 1297772 Query 59918 CGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGA-TGAGTCCTGGAGCATCATTTG 59976 || || | | || || | ||||| | | |||| ||| || | |||||| | Sbjct 1297771 TGC-GTCCAGAAGAAGGCCAATTGGGCGCTCCGCTGGATTGACGGCT-CCGAATCATTCG 1297714 Query 59977 CACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG 60036 || | || | | || || || |||||||| ||||| |||||||| || ||||| | Sbjct 1297713 CAGAGCGAATTGTCGCCTTCGCCTGCGTGGAGGGAATATTCTTCTCCGGAAGCTTCTGCG 1297654 Query 60037 CTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGA 60096 | || |||||||| || ||||| || || |||||||| ||| |||||| |||||| | | Sbjct 1297653 CCATCTTCTGGCTGAAGAAGCGGGGGCTGATGCCGGGGTTGACTTTCTCGAACGAGTTAA 1297594 Query 60097 TTTCCCGGGACGAGGG 60112 |||| || |||||||| Sbjct 1297593 TTTCTCGCGACGAGGG 1297578 >seq20 Length=956477 Score = 141 bits (156), Expect = 1e-28 Identities = 306/447 (68%), Gaps = 12/447 (3%) Strand=Plus/Minus Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 ||||||| ||||||||||||| || |||||||||||||| || || || || || Sbjct 871201 CGACGAGAAGCATTTCATCAAACACGTTCTGGCCTTCTTCGCCGCCTCCGACGGCATCGT 871142 Query 59738 GATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 ||||||| ||| | | || ||| ||||| || ||||| | || ||||| | Sbjct 871141 CCTGGAAAACCTAGCC--GGACGCTTCATGAAGGAGGTGCAGATCTCGGAAGCCCGCGCC 871084 Query 59796 TTCTACGCGTATCAG-TCGTTCAA-CGAGTCTATCCACTCCGAGACGTACTCGCTCATGA 59853 ||||||| | ||| ||| ||| ||| || |||||||||| |||| ||| | Sbjct 871083 TTCTACGGTTTCCAGATCG--CAATCGAAAACATACACTCCGAGATGTACAGCCTCCTCC 871026 Query 59854 TCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-G 59912 |||| | | |||||| | || |||||| | || ||||| || || ||||| | Sbjct 871025 TCGAATCCTACATAAAGGATTCCGACGAGAAGAACAGGCTCTTCCGCGCAATCGAGACCG 870966 Query 59913 TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATC 59971 ||||| || || | || || | ||||| | | ||||| || | || | | Sbjct 870965 TCCCCTGC-GTGGAGAGGAAGGCCAATTGGGCACTCCGCTGGATCGACGGC-GGCGAGTG 870908 Query 59972 ATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 || || | || | || || || || ||||||||||| || |||||||| || || Sbjct 870907 TTTCGCCGAGCGGATAATCGCGTTCGCCTGCGTGGAAGGGATATTCTTCTCCGGAAGCTT 870848 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 ||| || || |||||||| || ||||| || || |||||||| ||| |||||| ||||| Sbjct 870847 CTGCGCCATATTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGTTGACTTTCTCGAACGA 870788 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCA 60118 | |||| || || ||||| || || || Sbjct 870787 GTTGATATCGCGTGACGAAGGTCTGCA 870761 >seq10 Length=940881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 |||||||||||||| ||||| |||||| | || | |||||||| ||| || || ||| Sbjct 668730 TTCTGTGCTATTTTTTGGCTTAAAAAGAGGGGATTAATGCCGGGATTGACATTTTCGAAC 668789 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| ||||| |||||||||| ||||| Sbjct 668790 GAGCTTATTTCTAGGGACGAGGGTCTCCA 668818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548509633289280