Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq504 136 4e-27 seq20 122 1e-22 seq1949 86.0 7e-12 seq1 86.0 7e-12 seq811 84.2 2e-11 >seq504 Length=2204878 Score = 136 bits (150), Expect = 4e-27 Identities = 332/491 (68%), Gaps = 18/491 (4%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 || || || ||||| || | | || ||||| || || |||||||||| ||| |||||| Sbjct 1297593 ATTAACTCGTTCGAGAAAGTCAACCCCGGCATCAGCCCCCGCTTCTTCAGCCAGAAGATG 1297652 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 || |||||| || |||||| || || || || || || |||||||||| || | Sbjct 1297653 GCGCAGAAGCTTCCGGAGAAGAATATTCCCTCCACGCAGGCGAAGGCGACAATTCGCTCT 1297712 Query 74904 GCGAACGGTGCATCGGAA--GTCA-TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960 ||||| | | ||||| |||| |||| | ||||| | || || | | || | Sbjct 1297713 GCGAATGAT---TCGGAGCCGTCAATCCAGCGGAGCGCCCAATTGGCCTT-CTTCTGGAC 1297768 Query 74961 GCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG-- 75017 |||||| ||||| ||||| || |||||||| |||||| | ||||||| | Sbjct 1297769 GCAGGGGACAGTTTCGATTGCGCGGAAGAGGTGGTTCTTCTCCGACGAGTCCTTGATGTA 1297828 Query 75018 AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTAC 75077 ||| | | | | || |||| |||| || || || |||| || ||| | | | Sbjct 1297829 AGCCT--CGAGGAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATGG-CGATTTGGAA 1297885 Query 75078 GC-GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATA 75134 || |||||| | || ||||||| ||||| || ||||| ||||| | | | ||| | Sbjct 1297886 GCCGTAGAAGGCGCGGGCCTCTGAGATCTGGACGTCCTTCATGAAACGTCC--GGCGAGA 1297943 Query 75135 TTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGG 75194 ||||||| ||||||||||| ||||||||||| || || || || |||||| || || Sbjct 1297944 TTCTCCAAAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAATGC 1298003 Query 75195 CGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCG 75254 |||| || | ||| | |||| | ||||| | | |||||| | |||||| Sbjct 1298004 TGCTCGCCGGAGGAGAGGGTTACCCAGTGGCGGAGGTCGTCGGACAAATCGACTTCCTCG 1298063 Query 75255 ACCGTCCAGAA 75265 | |||||||| Sbjct 1298064 GCGGTCCAGAA 1298074 >seq20 Length=956477 Score = 122 bits (134), Expect = 1e-22 Identities = 390/589 (66%), Gaps = 26/589 (4%) Strand=Plus/Plus Query 74783 TATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT 74842 |||||| || ||||| || | | || ||||| || || |||||||||| ||| || || Sbjct 870781 TATCAACTCGTTCGAGAAAGTCAACCCCGGCATCAGACCGCGCTTCTTCAGCCAGAATAT 870840 Query 74843 GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTG 74902 ||| |||||| || |||||| || ||||| || || || || |||| | || | Sbjct 870841 GGCGCAGAAGCTTCCGGAGAAGAATATCCCTTCCACGCAGGCGAACGCGATTATCCGCTC 870900 Query 74903 CGCGAACGGTGCA-TCG--GAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGA 74958 ||||| || ||| | ||| ||||| | ||||| | || || | | | Sbjct 870901 GGCGAAA----CACTCGCCGCCGTCGATCCAGCGGAGTGCCCAATTGGCCTTCCTCTCCA 870956 Query 74959 CCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG 75017 | |||||| || || ||||| || ||||||| || |||||| |||| |||||| | | Sbjct 870957 C-GCAGGGGACGGTCTCGATTGCGCGGAAGAGCCTGTTCTTCTCGTCGGAATCCTTTATG 871015 Query 75018 -AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCG-TTGAACGA-CTGG 75074 || | || | | || |||| |||| || || || ||| ||| ||| |||| Sbjct 871016 TAGGAT-TCGAGGAGGAGGCTGTACATCTCGGAGTGTATGTTTTCGATTG--CGATCTGG 871072 Query 75075 TACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGA 75132 | ||||||| | || || || | ||||| || ||||| |||| | | | | | Sbjct 871073 AAACCGTAGAAGGCGCGGGCTTCCGAGATCTGCACCTCCTTCATGAAGCGTCC--GGCTA 871130 Query 75133 TATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGT 75192 || |||| |||||||||||| ||||||||||| || ||||| || |||||| || | Sbjct 871131 GGTTTTCCAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCCAGAACGTGTTTGATGAAAT 871190 Query 75193 GGCGCTCATCGTCAGTG---AGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCT 75249 ||| ||||| ||| || | ||||| | |||||| | |||||| | | Sbjct 871191 ---GCTTCTCGTCGGTGGATAGGGTTTCCCAGTGGCGGAGGTCCTGGGACAAATCGACTT 871247 Query 75250 CCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAAT 75309 ||||| | |||||||| | ||||||||||||| ||| | | ||||| | Sbjct 871248 CCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTTGTACATCTCCCAAATTTGTGGGTATT 871307 Query 75310 TGATTGGAAATGTCGTAAATCGGGAGTTGCTGGGGGTGAGTATGGGGTC 75358 |||||||| | |||||| | | |||||||||| | ||| || Sbjct 871308 GAATTGGAAACATGCAGAATCGGTCCTGGTTGGGGGTGAGGAGGGGTTC 871356 >seq1949 Length=1471776 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1411200 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1411141 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1411140 TGAGCTATGAAAGC 1411127 >seq1 Length=4921564 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1632940 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1632999 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1633000 TGAGCTATGAAAGC 1633013 >seq811 Length=5210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 79633 ATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAATTGAGCTAC 79691 ||||| |||| |||| ||||||||||||||||||||||||||| ||||| ||||||| Sbjct 2557 ATGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTGAGCTAT 2616 Query 79692 GAAAGCAA 79699 |||||||| Sbjct 2617 GAAAGCAA 2624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547200869477600