Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq582 105 5e-18 seq2135 102 6e-17 seq2167 95.1 9e-15 seq149 87.8 1e-12 >seq582 Length=2128859 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| ||||| || || || || |||| || |||||| || Sbjct 290704 ATGCAAATCTTCGTGAAAACCCTTACCGGCAAGACCATCACCCTTGAGGTGGAAAGCTCC 290763 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| ||||| ||||| || || ||||| |||| || Sbjct 290764 GAC-----ACAATCGACAACGTCAAGGCCAAAATCCAGGATAAGGAAGGAATTCCCCCGG 290818 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||| || | || |||||||| ||||| | || || | |||| | | |||| | Sbjct 290819 ACCAGCAAAGGCTCATCTTTGCCGGCAAACAGCTCGAGGATGGCCGCACCCTCGCCGACT 290878 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||||| ||| ||| | || ||||| | ||| ||||||| ||| Sbjct 290879 ACAACATCCAAAAGGAGTCAACTCTCCACTTGGTCCTCCGTCTGCGTGGTGGC 290931 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || || ||||||||||| || || | || || || ||| || Sbjct 298760 ATGCAGATTTTCGTCAAGACCCTTACTGGGAAGACCATCACCCTCGAAGTGGAGAGCTCC 298819 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| || || ||||| ||||| |||| ||| | Sbjct 298820 GACACCATTGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATC 298877 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || ||||| ||||| || | || || | ||| | ||| | ||||| | Sbjct 298878 AGCAAAGATTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGTACTTTGGCAGATTATA 298937 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || |||||||||| | ||| | ||||| || Sbjct 298938 ACATCCAGAAGGAGTCTACACTGCATTTGGTCCTCCGTCTCCGTGGTGG 298986 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| || || || || || ||||| |||| || |||||| || Sbjct 298076 ATGCAGATCTTTGTGAAGACCCTCACCGGAAAGACGATTACCCTTGAGGTGGAAAGCTCC 298135 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| ||||| || || |||| ||| | Sbjct 298136 GACACCATCGATAAT--GTCAAGGCCAAAATTCAGGACAAGGAGGGCATTCCCCCGGACC 298193 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | | || ||||||||||| || |||| || | |||| ||| |||| |||| Sbjct 298194 AGCAGAGACTTATATTTGCCGGAAAGCAGCTGGAGGATGGCCGCACTTTGGCCGACTACA 298253 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| | ||| | ||||| || Sbjct 298254 ACATCCAGAAGGAGTCTACCCTCCACTTGGTCCTCCGTCTCCGTGGTGG 298302 >seq2135 Length=1067647 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || ||||| |||||||| ||||| | || || || ||| || Sbjct 902049 ATGCAGATATTTGTCAAGACTCTCACTGGGAAGACCATTACCTTGGAGGTTGAGAGCTCC 902108 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | |||||| || || ||||| ||||| |||| ||| ||| Sbjct 902109 GACACTATTGATAACGTCAAAGCCAAGATTCAAGACAAGGAAGGGATTCCCCCGGATCAG 902168 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTACAA 27968 || |||| |||||||| || || || ||||| || | || | |||| |||||||||| Sbjct 902169 CAGAGGTTGATTTTTGCAGGGAAGCAGTTGGAGGATGGTCGTACTCTTG-CCGATTACAA 902227 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||| || |||||| | || ||||| Sbjct 902228 CATCCAAAAGGAAAGCACTCTTCACTTGGT 902257 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || ||||| || ||||| ||||| | || || || ||| || Sbjct 902505 ATGCAGATTTTTGTCAAGACTCTCACCGGGAAGACCATTACCTTGGAGGTTGAGAGCTCC 902564 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | | ||| |||||| || || ||||| ||||| | || ||| | Sbjct 902565 GACACTATTGATAAT--GTCAAAGCCAAGATTCAAGACAAGGAAGGAATCCCACCGGACC 902622 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 | ||| || | || ||||| || || || ||||| || | || | |||| |||||||| Sbjct 902623 AACAAAGGCTGATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGTACTCTTG-CCGATTAC 902681 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||||||||| ||||||||| | || |||||| Sbjct 902682 AACATCCAAAAGGAGAGCACTCTTCACTTGGTT 902714 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || ||||| ||||| || || || | || ||||| ||| || Sbjct 902277 ATGCAGATTTTTGTCAAGACTCTCACTGGAAAGACCATCACCTTAGAGGTCGAGAGCTCC 902336 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| || ||| ||||| || || |||| ||| | Sbjct 902337 GACACCATTGACAAC--GTTAAAGCTAAGATACAGGACAAGGAGGGCATTCCCCCGGACC 902394 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| |||| || ||||| || || || | || || | |||| |||| | |||||| Sbjct 902395 AGCAGAGGTTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACTCTTG-CGGATTAC 902453 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||| ||||||||| | || ||||| Sbjct 902454 AACATCCAAAAGGAGAGCACTCTTCACTTGGT 902485 >seq2167 Length=1051226 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||||||||| ||||| || || |||| ||||| ||| | Sbjct 204898 ATGCAGATTTTTGTGAAAACTCTTACCGGGAAGACCATCACTCTTGAAGTCGAGAGCTCA 204839 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | ||||| | ||| |||||| ||| || ||||| ||||| |||| ||| | Sbjct 204838 GATACGATCGATAAT--GTCAAAGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGACC 204781 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || || ||||| || || ||| | || || | || | | | | ||||||| Sbjct 204780 AGCAAAGATTGATCTTTGCTGGCAAGCAACTCGAAGATGGTCGAACCCTCGCTGATTACA 204721 Query 27968 ACATCCAAAAAGA 27980 | ||||| ||||| Sbjct 204720 ATATCCAGAAAGA 204708 >seq149 Length=2637241 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || |||||||| || || || ||| || || | || || || ||| Sbjct 721758 AAAATGCAAATCTTCGTGAAAACCCTAACCGGAAAAACAATCACTCTCGAAGTGGAGAGC 721817 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| ||||| || || ||||| |||||| | ||| || Sbjct 721818 TCCGACACCATCGACAAT--GTCAAGGCGAAGATCCAGGACAAGGAAGGTATCCCGCCGG 721875 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || ||||||||||| |||| |||| || | ||| |||| | Sbjct 721876 ATCAGCAGCGCCTCATCTTCGCCGGAAAACAGCTGGAGGACGGCCGGACCTTAGCCGACT 721935 Query 27965 ACAACATCCAAAAAGA 27980 ||||||| || || || Sbjct 721936 ACAACATTCAGAAGGA 721951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355852806394524