Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2167 104 2e-17 seq310 102 7e-17 seq582 96.9 3e-15 >seq2167 Length=1051226 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || | ||||||||| || || ||| ||||| || |||||||||||| Sbjct 203760 CCTCCTCTCAATCGCAGCACCAAATGAAGAGTCGACTCCTTTTGAATGTTATAATCGGCA 203819 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||||| | || || ||||| || || ||||| || || | |||||||| | || Sbjct 203820 AGTGTTCTACCATCTTCGAGCTGCTTACCGGCAAAGATCAGTCTTTGCTGGTCTGGAGGG 203879 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC--TCCA 39235 | | ||||||||| ||||||| |||| | | | || | || || || | Sbjct 203880 ATACCTTCTTTGTCCTGGATTTTCGCCTTGACATTGTCGATTGTGT--CTGAACTTTCAA 203937 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | |||| ||||| | ||||| |||| || || || || ||||||||| Sbjct 203938 CTTCCAAAGTGATTGTCTTTCCAGTCAATGTCTTTACGAAAATTTGCATC 203987 >seq310 Length=2395884 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || ||||||||||| |||||||| || | || || ||||| ||||| ||||| Sbjct 1997622 TCCTTCTGGATATTATAATCCGCAAGTGTACGACCATCTTCTAGCTGCTTGCCTGCAAAG 1997563 Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||||| | ||| || || |||||| | || ||||| ||| ||||||| |||| | Sbjct 1997562 ATAAGCCTCTGTTGATCAGGTGGGATCCCT-TCTTTATCCTGGATTTTCGCCTTGACATT 1997504 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | |||||| ||||| |||| |||||| | || || |||| || || || Sbjct 1997503 GTCAATCGTATCAGAACTTTCCACCTCCAAAGTGATAGTCTTCCCAGTCAAAGTCTTGAC 1997444 Query 39273 AAAGATTTGCATC 39285 ||||||||||||| Sbjct 1997443 AAAGATTTGCATC 1997431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || || || |||| ||| ||||| ||| ||||| ||||||||||| ||| Sbjct 1997430 CCGCCTCTCAACCGCAAAACCAGATGAAGCGTCGACTCCTTTTGGATATTATAATCTGCA 1997371 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| | | || || ||||| || || ||||| || | ||| |||||||| | || Sbjct 1997370 AGTGTCCTCCCATCTTCGAGCTGCTTACCTGCAAAGATCAAACGTTGCTGGTCTGGAGGA 1997311 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC--TCCA 39235 | | || ||||| |||||| || | | | | ||| | || || || | Sbjct 1997310 ATACCTTCCTTGTCTTGAATTTTCGCCTTCACATTGTCGATCGTGT--CTGAACTTTCAA 1997253 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| || || ||||||| |||| || || ||||| || ||||| Sbjct 1997252 CCTCCAGTGTAATGGTTTTTCCGGTCAAAGTCTTGACAAAAATCTGCAT 1997204 >seq582 Length=2128859 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || || ||||| ||||| || |||| ||| Sbjct 298056 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTGCGACCGTCTTCA 297997 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || || | ||||||||| | || | | ||| |||||| | Sbjct 297996 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGG 297937 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 || || |||| ||| | | | || || ||| ||||| || | ||||| | Sbjct 297936 ATCTTAGCCTTGA-CGTTGTCGATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATGGT 297881 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 ||| || || || ||||| |||||||| ||||||| ||| Sbjct 297880 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCTGTAC 297842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429534019987556