Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq2167 98.7 8e-16 seq1098 89.7 4e-13 >seq2167 Length=1051226 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 |||| ||| | ||| | ||| |||||||| |||||||||||||| |||| ||| || | Sbjct 204000 CTTAGCACAAGGTGGAGAGTCGATTCTTTCTGAATATTGTAATCAGCCAGCGTTCTGCCA 204059 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 ||||| | || || || ||| | || || ||||| ||||| || | |||||||||| Sbjct 204060 TCTTCGAGCTGCTTACCTGCAAAGATTAGTCTTTGCTGGTCCGGAGGGATGCCTTCTTTG 204119 Query 101144 TCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAA 101201 || ||||| ||| |||| | | | || || || || || ||| | |||| Sbjct 204120 TCTTGGATTTTGGCTTTAACATTGTCGATTGTGTC--TGAACTTTCGACTTCCAAAGTAA 204177 Query 101202 TAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || || || |||||||| || | || |||||||| Sbjct 204178 TCGTCTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 204214 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/236 (69%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| || | ||| | ||||| | || | ||||||||| |||||||| |||||||| | Sbjct 204214 TGCCACCCCTCAACCGCAACACAAGATGGAGAGTTGATTCCTTTTGAATGTTGTAATCCG 204273 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| ||| | |||||| | ||| || || ||| | || || ||||| |||||| | Sbjct 204274 CCAATGTTCTACCATCTTCAAGTTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGAG 204333 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | ||||||||||| ||||| ||| || | | | | || || || || Sbjct 204334 GGATCCCTTCTTTGTCTTGGATTTTGGCTTTAACGTTGTCGATTGTGTC--TGAAC---- 204387 Query 101190 TTTCGAC------GGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||||||| || || || || || ||||| || |||| |||||| |||||| Sbjct 204388 TTTCGACCTCCAAAGTGATTGTCTTTCCAGTCAAAGTCTTAACAAAAATCTGCATT 204443 >seq1098 Length=1756062 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || || || | ||| | || ||||||||||| ||||||||||| |||| |||| || | Sbjct 778416 CTCAAAACGAGGTGAAGGGTCGATTCTTTTTGGATATTGTAATCTGCCAAAGTTCTGCCA 778357 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 ||||| || ||||| || ||| |||| ||||| || ||||| || | ||||||||| Sbjct 778356 TCTTCTAACTGTTTACCAGCAAATATCAGCCTCTGCTGGTCAGGAGGTATTCCTTCTTTG 778297 Query 101144 TC 101145 || Sbjct 778296 TC 778295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409649756056908