Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq20 131 1e-25 seq10 98.7 8e-16 seq1385 89.7 4e-13 seq848 86.0 5e-12 >seq20 Length=956477 Score = 131 bits (144), Expect = 1e-25 Identities = 402/617 (65%), Gaps = 5/617 (1%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAA 4606 ||||| ||||| || |||| ||||||||| | || | |||| ||||| || || || || Sbjct 870746 CACGCGAAATCGCAGTGCAGACCTTCGTCAC-GCGATATCAACTCGTTCGAGAAAGTCAA 870804 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 || ||||| | ||| | ||| || ||||| ||||| ||| || || || ||||| Sbjct 870805 CCCCGGCATCAGACCGCGCTTCTTCAGCCAGAATATGGCGCAGAAGCTTCCGGAGAAGAA 870864 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 ||| ||||| ||| ||| ||||| | || || |||| | || || | | | Sbjct 870865 TATCCCTTCCACGCAGGCGAACGCGATTATCCGCTCGGCGAAACA-CTCGCC--GCCGTC 870921 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 ||||| | |||||| || || || ||| ||||| || | || | || ||| Sbjct 870922 GATCCAGCGGAGTGCCCAATTGGCCTTCCTCTCCACGCAGGGGACGGTCTCGATTGCGCG 870981 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 || | | | || || | || | || || | || | || ||||| ||||| Sbjct 870982 GAAGAGCCTGTTCTTCTCGTCGGAATCCTTTATGTAGGATTCGAGGAGGAGGCTGTACAT 871041 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTAC 4906 || || ||||| ||||| || || ||||| || ||||| ||| | ||||| | | Sbjct 871042 CTCGGAGTGTATGTTTTCGATTGCGATCTGGAAACCGTAGAAGGCGCGGGCTTCCGAGAT 871101 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 || || || || || | | | ||| |||||| || || ||||| ||| || Sbjct 871102 CTGCACCTCCTTCATGAAGCGTCCGGCTAGGTTTTCCAGGACGATGCCGTCGGAGGCGGC 871161 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 || || |||| ||| || || || | || ||||| | || ||| |||||| Sbjct 871162 GAAGAAGGCCAGAACGTGTTTGATGAAATGCTTCTCGTCGGTGGATAGGGTTTCCCAGTG 871221 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 | | | || | | ||||| ||||| || | ||||| || || ||||| || ||||| Sbjct 871222 GCGGAGGTCCTGGGACAAATCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCCTTTTT 871281 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTAGG 5146 |||||| |||||| | || || ||||| |||| ||| |||| || | ||| || Sbjct 871282 GTACATCTCCCAAATTTGTGGGTATTGAATTGGAAACATGCAGAATCGGTCCTGGTTGGG 871341 Query 5147 TGTAAGAAGCGGTTCTT 5163 || || || ||||||| Sbjct 871342 GGTGAGGAGGGGTTCTT 871358 >seq10 Length=940881 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 ||||| || ||||| ||||| || | ||| ||||| || ||| || ||||| ||||| Sbjct 668839 AATAAGCAAGCAAAGTCACAGTGGAGACCCTCGTCCCTAGAAATAAGCTCGTTCGAAAAT 668780 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || ||||| |||||||| || ||||||||||||||||| ||||| Sbjct 668779 GTCAATCCCGGCATTAATCCCCTCTTTTTAAGCCAAAAAATAGC 668736 >seq1385 Length=1650224 Score = 89.7 bits (98), Expect = 4e-13 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 ||||| || ||||| ||||| || | ||| |||||||| ||| || ||||| |||| Sbjct 1058444 AATAAGCAAGCAAAGTCACAGTGGAGACCCTCGTCTCTAGAAATAAGCTCGTTCGAAAT- 1058502 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || ||||| ||| |||| || ||||||||||||||||| ||||| Sbjct 1058503 GTCAATCCCGGCCTTAATCCCCTCTTTTTAAGCCAAAAAATAGC 1058546 >seq848 Length=4381129 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 ||||| || ||||| ||||| || | ||| | |||||| ||| || ||||| |||| Sbjct 2008185 AATAAGCAAGCAAAGTCACAGTGGAGACCCTTGTCTCTAGAAATAAGCTCGTTCGAAAT- 2008243 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 || ||||| ||| |||| || ||||||||||||||||| ||||| Sbjct 2008244 GTCAATCCCGGCCTTAATCCCCTCTTTTTAAGCCAAAAAATAGC 2008287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427038087276596