Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1991 107 3e-18 seq848 98.7 1e-15 >seq1991 Length=3980371 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| |||||||| | || | ||||||| || | |||| | ||| |||| ||| || Sbjct 851766 ACCACCCTGATCCACGTACCGAGCGGTGTCGTTGAAGACTCGAAGCATCGGAACAATGCC 851825 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||| |||||||||||||| ||| |||||||||||| | || || || ||| ||| || Sbjct 851826 GTTGGATGTTCCATTTGTCCCACGTATATAACTTCCAGTAGCACGTATGTTATGAATAGA 851885 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || |||||||| || |||| |||||| ||||| |||||||| || Sbjct 851886 CAAACCGATGCCTCCTGCTGATTTGCTAATTACAGCGCACTCCTTCAACGTATCGTATAT 851945 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || || || || |||| | |||||| || || Sbjct 851946 TCCCTCAATGCTATCCTCTTTCATACATATAAGAAAGCAACT 851987 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| ||||| || | || ||||||||||| || ||||| || ||| | |||| Sbjct 852655 GTTCCAGCATTGAAAAGGGTGGGAGATGCATGAGTGAACCACCGTTGAGACAAAAGATGA 852714 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||| |||| ||| || || || || || || || || | || | ||||||| Sbjct 852715 TACGTTTTAATAACTGCATCGATATCATCTTTGTGGATACCGACAGAAACTCTCATCAAC 852774 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || || || |||||||| ||| | | || || | ||| || |||| | Sbjct 852775 ATGTGTTGTGGCCTTTCAACAACCTTCCCTTGGACCTTTAAAAGGTAAGACCTTTCGAGG 852834 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||||||||||| | | ||| |||||||| ||||| || || Sbjct 852835 GTTTTAAAACCAAAGAAATCATATTCGAAGTCTCTGTCGTATATTAT 852881 >seq848 Length=4381129 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | |||||||||||||| || |||||| || ||| | |||| | Sbjct 3844255 GTTCCAGCATTAAAAAGAGTCGGAGATGCATGAGTGAACCATCGTTGAGACAACAGATGG 3844314 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||| ||| ||| || || || || || || || || | || | ||| ||| Sbjct 3844315 TACGTTTTTATAACTGCGTCGATATCATCTTTGTGTATACCAACAGAAACTCTCATTAAC 3844374 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || |||||||| |||||||| ||| | | || | | ||| || |||| | Sbjct 3844375 ATGTGCTGAGGCCTTTCAACAACCTTCCCTTGGACCTTTAGGAGGTAAGACCTTTCGAGC 3844434 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| | | |||| ||||||||| || || || || Sbjct 3844435 GTTTTGAAACCAAAGAAATCGTATTCAAAGTCTCTGTCATATATTAT 3844481 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | ||||||| ||| | |||| | ||| |||| || || Sbjct 3843651 ACCCCCTTGATCAACATACCGAGCGGTGTCATTGAAGACTCGAAGCATCGGAACGATGCC 3843710 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 ||| ||| |||||||||||| |||||||||||| | || || || ||| | || Sbjct 3843711 GTTGGATTGTCCATTTGTTCCGCGTATATAACTTCCAGTCGCACGGATGTTATGCACAGA 3843770 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || || || || || || |||| |||||| |||||||||||||| || Sbjct 3843771 CACACCAATACCACCAGCTGATTTGCTGATTACAGCGCACTCCTTCAATGTATCGTATAT 3843830 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || || || || ||||| | ||||| ||||| Sbjct 3843831 GCCCTCAATGCTATCCTCTTTCATGCATACGAGAAAGCAGCT 3843872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694649592407680