Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erythranthe_20guttata_20[refseq_20GCF_5F000504015.1_202014-04-02] 2,212 sequences; 322,166,964 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq385 251 9e-62 seq1832 250 3e-61 seq513 140 4e-28 seq617 93.3 5e-14 seq528 87.8 2e-12 >seq385 Length=2344269 Score = 251 bits (278), Expect = 9e-62 Identities = 248/318 (78%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 183742 ATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTG 183801 ||| | || || |||||||| ||||| || || || |||||||| ||||| ||||| || Sbjct 1147316 ATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG 1147375 Query 183802 GTTACTTCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAA 183860 || ||||| | | | | || | |||||||| || ||| || || | ||||||| Sbjct 1147376 GTAACTTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAG 1147434 Query 183861 GTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGTCGTCT 183920 || |||||||| ||||| || || || ||||| || |||||||| || ||||| || | Sbjct 1147435 ATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGATT 1147494 Query 183921 GATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTTG 183980 ||||||||| |||||| || |||||||||||||| | || |||||||| |||||||| Sbjct 1147495 GATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCGTTACATTTCTTCCTAGCTGCTTG 1147554 Query 183981 GCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAACCTGAA 184040 ||| || || || |||||||| |||||| | ||| | ||||||||||| |||||||| || Sbjct 1147555 GCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTTAACCTAAA 1147614 Query 184041 TGGTTTTAACTTCAACCA 184058 ||||||||| |||||||| Sbjct 1147615 TGGTTTTAATTTCAACCA 1147632 >seq1832 Length=4053948 Score = 250 bits (276), Expect = 3e-61 Identities = 342/475 (72%), Gaps = 2/475 (0%) Strand=Plus/Plus Query 186141 ACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 186200 ||||| ||||| || ||||||||| | | | | |||||| | | |||| |||||| Sbjct 887146 ACGGCCGCAGTTTCCACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 887205 Query 186201 CCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTG 186260 ||||| | ||||||||| | | || |||| ||| | || || || |||| |||||| Sbjct 887206 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 887265 Query 186261 GCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG- 186319 || || || || || || | || |||||||||||| | || || ||||| | ||| Sbjct 887266 GCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGA 887325 Query 186320 TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGT 186379 ||| | | | || || || ||||| || || ||||||||||| || | ||| ||||| Sbjct 887326 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTTTCTGGTCCAATTGTTGTTTTTGT 887384 Query 186380 TAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGG 186439 | ||||||||| || || || || || ||||| |||||||| || || ||||| Sbjct 887385 TTATGTATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGG 887444 Query 186440 AGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAA 186499 | ||||| || ||| ||||| | | || | |||||||| || || ||||||||||| Sbjct 887445 TATAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGTTGAA 887504 Query 186500 TCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCA 186559 ||||| || |||||||| || || ||| | | || | |||| |||| | || || || Sbjct 887505 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCA 887564 Query 186560 TGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTC 186614 ||||| ||| |||||||||||| | | ||||||||| || ||||| |||||| Sbjct 887565 TGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 887619 Score = 241 bits (266), Expect = 2e-58 Identities = 340/475 (72%), Gaps = 2/475 (0%) Strand=Plus/Plus Query 186141 ACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 186200 ||||| ||||| || | ||||||| | | | | |||||| | | |||| |||||| Sbjct 906901 ACGGCCGCAGTTTCCAATCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGT 906960 Query 186201 CCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTG 186260 ||||| | ||||||||| | | || |||| ||| | || || || |||| |||||| Sbjct 906961 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 907020 Query 186261 GCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG- 186319 || || || || || || | || |||||||||||| | || || ||||| | ||| Sbjct 907021 GCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAGCTTGCTCGA 907080 Query 186320 TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGT 186379 ||| | | | || || || ||||| || || ||||||||||| || | ||| ||||| Sbjct 907081 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTTTCTGGTCCAATTGTTGTTTTTGT 907139 Query 186380 TAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGG 186439 | ||||||||| || || || || || ||||| |||||||| || | ||||| Sbjct 907140 TTATGTATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCACTTAGTTTTGG 907199 Query 186440 AGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAA 186499 || ||||| || ||| ||||| | | || | |||||||| || || |||||| |||| Sbjct 907200 TGTAGCAGCTATATTTCGATTCATCCTCTTTTTTCAAGGATTTCATAATTGGACGCTGAA 907259 Query 186500 TCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCA 186559 ||||| || |||||||| || || ||| | | || | |||| |||| | || || || Sbjct 907260 CCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCA 907319 Query 186560 TGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTC 186614 ||||| ||| |||||||||||| | | ||||||||| || ||||| |||||| Sbjct 907320 TGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 907374 Score = 132 bits (146), Expect = 6e-26 Identities = 236/337 (70%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 183301 TTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTC 183360 ||| | | ||||||||| || || || || | || || ||| || ||| || || Sbjct 934716 TTCATTGTTGCTCCTCCGGTAGATATTGATAGTATTCGTGAAAATATTTTTGGATCTCTA 934657 Query 183361 ATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTT 183420 | || |||||||| || ||||| ||||| |||||||| |||| | || | || Sbjct 934656 CTTTACGGAAACAATATTATCTCAGGTGCTATTGTTCCTACTTCTGCAGGTATCG--CTG 934599 Query 183421 CACTTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCT 183480 |||| || || || ||||||||| |||| | ||||| ||| | || || ||||||||| Sbjct 934598 CACTCTTACCCAATATGGGAAGCAACATCCATTGATGAATGGTTATACAATGGTGGTCCT 934539 Query 183481 TACCAACTCGTAGTCTTCCACTTCCTCATTGGCGT--CTT-CTGCTACATGGGTCGTGAG 183537 || |||| | || | ||||| | |||| || ||| || ||||||| ||||||| Sbjct 934538 TATGAACTAATTGTTCTACACTTTTTACTTGGTGTAACTTGTTGTTACATGGTTCGTGAG 934479 Query 183538 TGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTAT--AGCGCA- 183594 |||||| | | | |||||| | |||||| | |||||| ||| || ||| ||| || Sbjct 934478 TGGGAACT-TAGTTCCGTCTAGATATGCGACATTGGATTGCTGTGGCATATTCAGCTCAT 934420 Query 183595 --CCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTA 183629 | |||| | |||| |||||||| ||| || |||| Sbjct 934419 GTCATGTTAC-ACTGCTACCGCTGTTTTCTTGATCTA 934384 Score = 113 bits (124), Expect = 6e-20 Identities = 317/481 (66%), Gaps = 13/481 (3%) Strand=Plus/Minus Query 186474 CAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTT 186533 |||||||| || || |||||| |||| ||| || ||||| || || | | | | | Sbjct 2037650 CAAGGATTTCATAATTGGACGCTGAACTTATTTCATATGATCGGAGTTTCCGATGTATTG 2037591 Query 186534 GGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGAT 186593 || | |||| | || | | || ||||||| ||| | |||||||||| | | ||||||| Sbjct 2037590 GGGGCTGCTTTCCTATGTGGTATTCATGGTGATACCGAAGAAAATACTTTATTTGAAGAT 2037531 Query 186594 GGCGAACAAGCAAACACATTCAAAGCATTCG---ATACGA-CGCAAGAAGAAGAAACCTA 186649 || || ||||| || | || | | | || ||| | |||| |||||||| || Sbjct 2037530 GGTGATGGTGCAAATACGTACATTTCGTGCTTTTATCCGAACTCAAGCTGAAGAAACTTA 2037471 Query 186650 TTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAA 186709 || |||||||| || || | || ||||| | ||||| || |||| ||| | || Sbjct 2037470 TTACATGGTCACCGCTGACCGCTTTTGGTCCTAAATCTTTGGGGTTGCTTTTTTTACTAG 2037411 Query 186710 GCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATG-----GGTCTTTGGACCTCT 186764 ||||| | ||||||| ||| | ||||| | | || | ||| | |||| | Sbjct 2037410 AGGTTGGTTGAATTTCTTTATGTTATTTGTACAAGCTAAGTAACCGGTTTATGGATGAGT 2037351 Query 186765 TCCATTGGCATTATTGGTCTTGCTCTT-AACCTTCGTGCTTATGACTTTGTAAGTCAGGA 186823 | |||| | || | | |||| | | ||||| || |||||||||||||| |||||| Sbjct 2037350 GCTCTTGG-AGTAGTCGGCTTGGCCATGAACCTACGCGCTTATGACTTTGTTTCTCAGGA 2037292 Query 186824 GGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAATATCCTATTGAA 186883 | | || | | ||||| || | | || |||| ||||| || || || || || Sbjct 2037291 ATTTGGCGCCGTGAAAGATCCAGAATCTGGAACTCTCTACACCAAAAACATTCTTTTAAA 2037232 Query 186884 TGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAACTTTGTATTTCC 186943 |||||| | || |||| ||| | ||| | || ||||||||| |||| ||| Sbjct 2037231 CGAAGGTATTTGTATTTGGAGGGCGGCTCAAGATTAGCCTCATGAAAAC--CGTATATCC 2037174 Query 186944 T 186944 | Sbjct 2037173 T 2037173 >seq513 Length=378260 Score = 140 bits (154), Expect = 4e-28 Identities = 213/301 (71%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 186131 TAATTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCT 186190 |||||| | ||||| ||||| || ||||||||| | | | | |||||| | | | Sbjct 131839 TAATTTCTTAACGGCCGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTT 131780 Query 186191 ACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTG 186250 ||| ||||||||||| | ||||| ||| | | || |||| ||| | || || || || Sbjct 131779 ACTATGGGGTCCTGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTG 131720 Query 186251 GAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGA 186310 || |||||| || || || || || || | || |||||||||||| | || || ||||| Sbjct 131719 GACTTTTGTTGCTCTGCATGGTGCGTTCGGACTAATAGGTTTCATGTTACGTCAATTTGA 131660 Query 186311 AATCAGTCG-TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCG 186369 | ||| ||| || | || || || |||| || || ||||||||||| || | Sbjct 131659 GCTTGCTCGATCT-GTTCAATTGCGACCTTATGATGCAATCGCATTTTCTGGTCCAATTG 131601 Query 186370 CTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTC 186429 |||| |||||| ||||||||| || || || || || ||||| |||||||| || | Sbjct 131600 CTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCAC 131541 Query 186430 C 186430 | Sbjct 131540 C 131540 >seq617 Length=2014290 Score = 93.3 bits (102), Expect = 5e-14 Identities = 167/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | ||||| || || |||||||||||||| || | | || | Sbjct 804349 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTGGGCTGGTCCGGCCCATTGCTCT 804408 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | | | || | ||| | || | ||||| ||||| || | Sbjct 804409 TTCCTTGTGCCTATTTCTCTTTAGGGAGTTGGTTCACATGTACAACCTTTGTAACTTCAT 804468 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 ||||||||||||| ||||| ||| || | || || |||||| | ||||| ||| Sbjct 804469 GGTATACCCACGGATTGGCCAATTCCTATTTGGAAGGCTGTAATTTCTTAACGGCCGCAA 804528 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | |||||| | | |||| ||||||||||| | | Sbjct 804529 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTATTGTTACTATGGGGTCCTGAAGCAC 804588 Query 186211 AAGG 186214 |||| Sbjct 804589 AAGG 804592 >seq528 Length=404557 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 186096 ACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTGTCA 186155 ||||| || ||||| ||| || | || || ||||||| | ||||| ||||| || Sbjct 134185 ACCCATGGATTGGCCAGTTCGTATTTGGAAGGCTGTAATTTTTTAACGGCCGCAGTTTCT 134244 Query 186156 ACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGA 186215 |||||| || | | | |||||| | | |||| ||||||||||| | |||||| Sbjct 134245 ACTCCTACTACTAGTTTAGCGCATTCTTTATTATTACTATGGGGTCCTGAAGCACAAGGA 134304 Query 186216 GATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCC 186275 ||| | | || |||| ||| | || || || |||| |||||| || || | || || Sbjct 134305 GATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTGTATGGTGCG 134364 Query 186276 TTTGCTCTCATAGGTTTCATG 186296 || | || |||||||||||| Sbjct 134365 TTCGGACTAATAGGTTTCATG 134385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622053199753440